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MN095770.1__QFR57724.1__CPT_Slocum_167__00144

Bact-Vir

MN095770.1__QFR57724.1__CPT_Slocum_167__00144

Identity

Accession:
MN095770 ↗
Kingdom:
phage

Quality

46.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Serratia_phage_Slocum

TaxID: 2601679

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 106-237
PDB
D2 high residues 855-928
PDB
Domain cluster: rep: JX560968.1__AFU62386.1__X__00055__D471-538
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12604.15 best gp37_C 27.0 5.80e-06 96.0% 61.1%
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.69 47.0 5.19e-01 70.3% 88.1%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.64 50.0 4.82e-01 83.8% 82.1%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.60 45.0 3.56e-01 79.7% 39.1%
4hxfB02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.59 44.0 3.04e-01 79.7% 45.3%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 51.0 4.13e-01 100.0% 51.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.56e-01 87.8% 92.4%
2jbwA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 44.0 3.06e-01 82.4% 42.2%
4zwnB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.58 43.0 2.94e-01 82.4% 36.7%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.57 47.0 3.83e-01 93.2% 47.9%
3sxxC01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 45.0 4.09e-01 86.5% 91.2%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 41.0 3.72e-01 78.4% 84.3%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 45.0 4.11e-01 87.8% 87.3%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 38.0 3.31e-01 70.3% 92.0%
7mhuA01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 47.0 3.07e-01 100.0% 32.0%
3wcyA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 35.0 3.42e-01 94.6% 58.1%
3d4eA02 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.54 46.0 4.52e-01 94.6% 91.0%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.53 45.0 4.05e-01 97.3% 77.6%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.53 47.0 3.86e-01 100.0% 76.5%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.52 44.0 2.73e-01 100.0% 26.4%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.51 44.0 3.12e-01 97.3% 45.8%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2491359 243.19.1.0 ↗ a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.73 67.0 5.39e-01 100.0% 64.0%
5079230 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.71 51.0 4.57e-01 82.4% 53.3%
2324048 1185.1.1.1 ↗ a+b two layers › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › A hypothetical protein from Neisseria gonorrhoeae › DUF6911 0.63 49.0 3.96e-01 82.4% 78.3%
3178465 719.1.1.8 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF29965 0.61 45.0 3.91e-01 81.1% 95.0%
3608236 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.60 46.0 4.80e-01 86.5% 93.8%
4944962 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.60 44.0 4.08e-01 93.2% 60.0%
3265170 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 45.0 4.74e-01 86.5% 93.8%
142633 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 44.0 4.56e-01 87.8% 92.4%
2491389 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.58 45.0 3.44e-01 86.5% 43.2%
4213539 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.57 43.0 4.47e-01 87.8% 93.8%
3281635 330.2.1.1 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.56 49.0 4.36e-01 100.0% 79.1%
5047218 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.55 47.0 3.99e-01 100.0% 62.2%
3741473 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 49.0 4.16e-01 100.0% 80.0%
3189756 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 45.0 3.79e-01 95.9% 80.6%
5024957 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.55 41.0 4.08e-01 82.4% 98.7%
4345080 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.54 40.0 4.19e-01 82.4% 90.8%
4021944 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.54 42.0 2.96e-01 85.1% 32.9%
3775135 5.1.4.257 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP, FG-GAP_3 0.54 45.0 2.83e-01 100.0% 31.1%
3433338 5.1.5.86 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 0.52 45.0 3.01e-01 100.0% 29.1%
4990980 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 41.0 3.82e-01 89.2% 81.1%
3811378 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.50 44.0 2.87e-01 100.0% 27.0%
D3 high residues 1108-1196
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 26.5 8.50e-06 52.8% 72.4%
D4 medium residues 35-104
PDB
Domain cluster: representative
D5 medium residues 435-588
PDB
D6 medium residues 589-656_673-738
PDB
D7 medium residues 775-829
PDB
D8 medium residues 1007-1064
PDB