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MN096267.1__QDH93844.1__X__00072

Bact-Vir

MN096267.1__QDH93844.1__X__00072

Identity

Accession:
MN096267 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Detrevirus› Pseudomonas_phage_vB_PaS_IME307

TaxID: 2591408

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
CATH (65)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.71 51.0 4.18e-01 75.0% 91.9%
7kx7A03 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.69 54.0 3.82e-01 85.3% 29.3%
4bgjA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 47.0 4.00e-01 76.5% 94.1%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.66 55.0 5.05e-01 97.1% 78.7%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.66 48.0 4.43e-01 77.9% 60.2%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.65 46.0 3.93e-01 79.4% 44.7%
2qh9A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.64 49.0 3.67e-01 88.2% 32.0%
1x49A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 52.0 5.19e-01 91.2% 95.7%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.64 45.0 3.70e-01 75.0% 89.2%
4k3yC00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.63 47.0 2.95e-01 77.9% 22.8%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.62 49.0 3.81e-01 91.2% 96.4%
1umzA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.62 54.0 3.64e-01 100.0% 32.2%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 50.0 5.09e-01 92.6% 94.0%
4ywrA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.62 48.0 3.36e-01 85.3% 49.6%
4a2bA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 48.0 4.40e-01 95.6% 63.2%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 50.0 4.53e-01 95.6% 85.1%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.61 53.0 4.30e-01 97.1% 72.9%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 48.0 4.80e-01 92.6% 100.0%
6krwA01 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 44.0 2.84e-01 76.5% 26.3%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 3.91e-01 83.8% 64.7%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 51.0 4.66e-01 95.6% 89.1%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 48.0 3.59e-01 94.1% 33.0%
5cr4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 47.0 3.35e-01 89.7% 39.7%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 3.66e-01 77.9% 88.0%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.59 49.0 3.73e-01 95.6% 74.6%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.58 42.0 3.36e-01 77.9% 83.3%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 46.0 3.62e-01 91.2% 60.2%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 41.0 2.77e-01 76.5% 27.2%
4kz1A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.58 42.0 3.40e-01 77.9% 88.9%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.58 42.0 2.96e-01 77.9% 23.3%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 45.0 4.41e-01 92.6% 94.9%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 39.0 3.10e-01 70.6% 57.2%
3nuwA01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.57 41.0 3.81e-01 77.9% 60.0%
4cu7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 47.0 3.92e-01 92.6% 87.6%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 49.0 4.52e-01 100.0% 76.9%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.57 47.0 3.36e-01 94.1% 63.8%
2hb5A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 45.0 3.60e-01 91.2% 70.0%
3hi7B02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.91e-01 98.5% 82.0%
3ap9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 47.0 3.69e-01 95.6% 56.3%
1nkgA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.56 47.0 4.36e-01 91.2% 89.4%
3pgbA03 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 4.02e-01 100.0% 95.7%
3ktnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.56 44.0 2.91e-01 92.6% 37.6%
4emtA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.56 45.0 3.61e-01 88.2% 84.3%
3vv1A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.74e-01 95.6% 54.6%
3zsjA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 46.0 3.73e-01 95.6% 59.4%
6ro0B02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 3.64e-01 83.8% 82.7%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 46.0 3.12e-01 97.1% 58.2%
2kw4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 41.0 3.35e-01 85.3% 45.6%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.55 46.0 4.08e-01 100.0% 72.9%
1g7eA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 41.0 3.54e-01 85.3% 92.6%
4euyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.54 43.0 3.98e-01 85.3% 90.7%
1tu5A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.81e-01 100.0% 83.5%
4nzrM02 2.160.20.180 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.54 39.0 2.97e-01 80.9% 64.1%
1bdgA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.30e-01 91.2% 37.8%
2rkuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 36.0 3.40e-01 73.5% 91.0%
3a7rA02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.52 41.0 3.90e-01 92.6% 75.3%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.52 39.0 3.38e-01 82.4% 79.8%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 38.0 3.52e-01 82.4% 96.9%
2lrgA00 2.60.60.60 Mainly Beta › Sandwich › Lipoxygenase-1 › 0.52 40.0 3.34e-01 85.3% 94.4%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.76e-01 91.2% 63.6%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.52 41.0 4.12e-01 92.6% 88.7%
4ix3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.26e-01 79.4% 85.0%
4wnoA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 38.0 3.56e-01 82.4% 97.7%
2ivnA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 40.0 3.09e-01 89.7% 36.9%
2qzuA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.51 35.0 3.28e-01 72.1% 63.5%
ECOD (82)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940463 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.79 71.0 5.65e-01 100.0% 63.0%
3266526 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.73 57.0 4.48e-01 91.2% 41.0%
4944430 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.71 56.0 5.38e-01 95.6% 73.8%
3176331 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.70 59.0 4.48e-01 94.1% 42.4%
3273079 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.70 44.0 3.99e-01 77.9% 48.3%
3169953 2484.5.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase 0.69 58.0 4.44e-01 94.1% 43.0%
3468117 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.69 58.0 4.30e-01 94.1% 39.4%
3615430 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 57.0 5.02e-01 91.2% 97.0%
3390746 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.69 54.0 3.99e-01 86.8% 38.4%
4537756 330.1.1.25 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF26980 0.68 58.0 5.45e-01 98.5% 83.5%
3439529 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.67 56.0 4.28e-01 94.1% 43.0%
4945290 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 51.0 5.31e-01 86.8% 95.0%
5038844 330.2.1.0 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.67 53.0 5.09e-01 89.7% 91.3%
3705941 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 55.0 5.23e-01 91.2% 95.0%
3494433 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.66 56.0 4.67e-01 97.1% 81.5%
3940074 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 55.0 4.40e-01 94.1% 50.0%
3787114 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 53.0 3.95e-01 91.2% 39.5%
3177409 330.1.1.13 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Mgm101p 0.65 50.0 3.81e-01 83.8% 46.7%
4386515 330.1.1.30 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › PF27148 0.65 49.0 5.03e-01 83.8% 98.5%
5019517 5090.1.1.6 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.65 57.0 4.37e-01 98.5% 61.3%
3238544 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.65 51.0 3.66e-01 89.7% 38.4%
4266613 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 55.0 5.18e-01 98.5% 85.9%
3697317 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 54.0 5.02e-01 98.5% 88.9%
4103424 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 54.0 5.10e-01 98.5% 91.8%
4066189 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 55.0 5.15e-01 98.5% 90.6%
3934870 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.63 49.0 4.16e-01 88.2% 64.0%
4072052 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.63 53.0 5.13e-01 98.5% 95.0%
4944011 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.63 48.0 4.44e-01 83.8% 65.6%
3490893 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.63 51.0 4.13e-01 88.2% 73.8%
3462089 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 52.0 4.93e-01 97.1% 84.7%
3390831 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.63 51.0 4.84e-01 88.2% 81.2%
3964553 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.62 48.0 3.89e-01 88.2% 42.1%
3395408 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 52.0 4.54e-01 97.1% 87.3%
4015125 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 50.0 4.92e-01 88.2% 89.3%
3676562 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 52.0 3.81e-01 98.5% 83.4%
3508171 3392.1.1.1 ↗ a+b two layers › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › Cytoplasmic domain of BfpC › PAP_PilO 0.62 43.0 3.33e-01 77.9% 30.3%
3385434 2484.1.1.261 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27038 0.62 44.0 3.50e-01 75.0% 39.3%
3931156 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 51.0 5.12e-01 92.6% 97.1%
3550395 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.62 50.0 4.58e-01 88.2% 72.2%
3496171 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.62 52.0 4.72e-01 91.2% 86.7%
3924433 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 50.0 3.54e-01 92.6% 37.8%
3788332 223.2.1.18 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin_2 0.62 50.0 3.78e-01 91.2% 43.7%
4039156 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.62 45.0 3.86e-01 79.4% 48.2%
3315568 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.61 46.0 4.57e-01 80.9% 87.1%
3452851 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.61 47.0 3.82e-01 85.3% 45.9%
4203072 330.1.1.19 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 0.61 52.0 4.59e-01 100.0% 87.6%
3924294 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 44.0 2.85e-01 76.5% 25.2%
3784375 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 51.0 4.80e-01 91.2% 88.7%
3245739 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.60 51.0 3.86e-01 95.6% 48.8%
3932544 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.60 47.0 3.41e-01 89.7% 36.4%
3938530 2484.1.1.66 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.60 48.0 3.47e-01 92.6% 38.2%
3934407 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.60 51.0 4.19e-01 92.6% 80.8%
1420619 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.60 51.0 4.66e-01 95.6% 89.1%
3936788 2484.1.1.17 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_1 0.60 48.0 3.51e-01 91.2% 34.3%
3740684 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 50.0 4.76e-01 91.2% 87.5%
3512065 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 45.0 4.61e-01 89.7% 86.2%
4180235 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.60 50.0 4.79e-01 94.1% 91.3%
4927342 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 41.0 3.80e-01 72.1% 74.4%
3834843 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.60 43.0 2.79e-01 76.5% 24.8%
3569462 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 42.0 3.31e-01 72.1% 52.9%
3782775 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 51.0 4.72e-01 98.5% 84.4%
3516863 330.1.1.10 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_MRPL44 0.59 51.0 4.58e-01 95.6% 92.6%
4938125 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.59 48.0 4.52e-01 94.1% 71.8%
3326324 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.59 45.0 4.54e-01 89.7% 84.3%
4975081 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 43.0 3.35e-01 79.4% 34.8%
3877924 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 47.0 4.51e-01 97.1% 84.7%
146271 243.3.1.5 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › FTP 0.57 49.0 4.51e-01 100.0% 78.0%
4344763 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.56 39.0 3.66e-01 72.1% 83.5%
3968468 4152.2.1.0 ↗ a+b two layers › Shew3726-like › Uncharacterized protein CV_2116 › Uncharacterized protein CV_2116 0.56 44.0 4.34e-01 89.7% 92.0%
4502261 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 44.0 3.74e-01 91.2% 68.0%
5073441 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.54 42.0 3.70e-01 89.7% 61.8%
3700841 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 43.0 3.16e-01 92.6% 50.5%
3954941 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.52 41.0 3.81e-01 89.7% 71.1%
3507047 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.52 43.0 3.79e-01 91.2% 75.0%
4227354 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 44.0 3.89e-01 94.1% 74.0%
4945498 244.3.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.51 42.0 3.73e-01 94.1% 64.8%
4115186 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 43.0 3.93e-01 94.1% 91.1%
4051753 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 42.0 3.88e-01 94.1% 90.0%
4296470 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 42.0 4.00e-01 92.6% 100.0%
3651207 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.50 42.0 2.86e-01 94.1% 35.4%
4037619 245.1.1.1 ↗ a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.50 41.0 3.90e-01 92.6% 94.1%
3988584 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.50 35.0 3.21e-01 80.9% 52.0%
D2 high residues 74-135
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 45.0 3.80e-01 100.0% 38.0%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 36.0 2.98e-01 100.0% 30.8%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 39.0 3.38e-01 100.0% 44.7%
7ctpA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 48.0 3.84e-01 100.0% 50.8%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 38.0 3.64e-01 79.0% 97.2%
2m2dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.29e-01 87.1% 67.8%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 35.0 2.85e-01 100.0% 33.6%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 39.0 3.32e-01 83.9% 54.8%
3r8yA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.51 34.0 3.41e-01 91.9% 66.7%
4i1kA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.50 38.0 3.11e-01 82.3% 80.5%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3774381 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 45.0 4.40e-01 100.0% 58.6%
3629491 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 44.0 4.68e-01 100.0% 74.5%
3408206 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.58 39.0 2.89e-01 100.0% 27.5%
3211262 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 37.0 3.11e-01 100.0% 35.0%
3328167 11.1.1.635 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_N_CWD1 0.55 41.0 3.33e-01 82.3% 64.0%
3211871 2008.1.1.31 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.54 35.0 2.36e-01 96.8% 16.7%
3636310 3504.2.1.1 ↗ beta barrels › MutM N-terminal domain-like › N-terminal domain of MutM-like DNA repair proteins › N-terminal domain of MutM-like DNA repair proteins › Fapy_DNA_glyco 0.52 43.0 3.32e-01 98.4% 78.8%
3497948 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 40.0 3.80e-01 100.0% 70.7%
4025181 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 40.0 3.37e-01 85.5% 74.5%
3286007 3844.2.1.1 ↗ a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.51 42.0 2.82e-01 93.5% 67.5%
5045719 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 42.0 3.50e-01 100.0% 83.9%
D3 high residues 141-222
PDB
Domain cluster: rep: OR545055.1__WOZ55951.1__P44_00030__00030__D3-82