←Back to structures
MN096355.1__QDK01139.1__SEA_PURKY_34__00034
Bact-VirMN096355.1__QDK01139.1__SEA_PURKY_34__00034
Identity
- Accession:
- MN096355 ↗
- Kingdom:
- phage
Quality
75.1
mean pLDDT
Taxonomy
TaxID: 2593351
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-57
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.79 | 59.0 | 4.45e-01 | 80.4% | 99.2% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.78 | 67.0 | 5.77e-01 | 96.1% | 62.0% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.76 | 62.0 | 4.21e-01 | 90.2% | 25.6% |
| 2e62A01 | 6.10.140.420 | Special › Helix non-globular › Helix Hairpins › | 0.74 | 58.0 | 5.79e-01 | 94.1% | 88.5% |
| 3rq9A00 | 1.10.287.2500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.74 | 49.0 | 4.22e-01 | 80.4% | 44.9% |
| 2om6A02 | 1.10.150.400 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.73 | 55.0 | 4.83e-01 | 88.2% | 54.4% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.69 | 48.0 | 4.25e-01 | 80.4% | 49.4% |
| 1ku9A02 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.69 | 51.0 | 4.70e-01 | 78.4% | 62.5% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.69 | 52.0 | 4.43e-01 | 86.3% | 49.4% |
| 2d2sA02 | 1.20.58.1220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain | 0.69 | 54.0 | 4.32e-01 | 86.3% | 44.6% |
| 3vkgA09 | 1.20.920.30 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.68 | 54.0 | 3.87e-01 | 86.3% | 30.6% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.68 | 61.0 | 5.54e-01 | 100.0% | 86.8% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.68 | 56.0 | 4.01e-01 | 100.0% | 29.7% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.67 | 53.0 | 4.40e-01 | 98.0% | 48.4% |
| 2jrmA00 | 1.10.10.620 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain | 0.66 | 45.0 | 4.33e-01 | 80.4% | 61.7% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.66 | 54.0 | 4.23e-01 | 96.1% | 41.0% |
| 1g2nA00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.65 | 52.0 | 3.37e-01 | 100.0% | 18.7% |
| 3l1nA01 | 6.10.140.790 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 48.0 | 4.83e-01 | 78.4% | 80.4% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 44.0 | 3.90e-01 | 72.5% | 48.0% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.65 | 53.0 | 4.78e-01 | 100.0% | 64.9% |
| 2fb5A01 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.64 | 51.0 | 4.56e-01 | 86.3% | 65.3% |
| 4uw9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 55.0 | 4.76e-01 | 100.0% | 91.6% |
| 1b06A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.64 | 48.0 | 4.37e-01 | 80.4% | 61.2% |
| 2kmuA00 | 1.10.10.1460 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 46.0 | 4.51e-01 | 76.5% | 76.8% |
| 3fkjA02 | 1.10.10.2240 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.64 | 40.0 | 3.72e-01 | 98.0% | 50.0% |
| 3pmiA02 | 6.10.300.20 | Special › Helix non-globular › cAMP-dependent Protein Kinase, Chain A › | 0.64 | 51.0 | 5.25e-01 | 92.2% | 100.0% |
| 4dvyP01 | 1.10.357.130 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.63 | 55.0 | 3.68e-01 | 98.0% | 78.2% |
| 1t72A02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.63 | 50.0 | 4.05e-01 | 88.2% | 44.9% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.63 | 51.0 | 4.59e-01 | 92.2% | 68.9% |
| 5fhiA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 46.0 | 3.40e-01 | 80.4% | 30.2% |
| 4l8jA04 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.62 | 48.0 | 4.66e-01 | 88.2% | 74.6% |
| 1cf7A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 43.0 | 4.02e-01 | 74.5% | 56.7% |
| 1br0A00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 47.0 | 3.55e-01 | 82.4% | 40.0% |
| 1dj2A02 | 1.10.300.10 | Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 | 0.61 | 48.0 | 4.06e-01 | 94.1% | 48.5% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 51.0 | 4.77e-01 | 96.1% | 95.4% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 45.0 | 3.98e-01 | 78.4% | 54.1% |
| 2js5A00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 45.0 | 4.10e-01 | 82.4% | 57.7% |
| 1pixA03 | 3.90.226.10 | Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 | 0.61 | 54.0 | 3.33e-01 | 100.0% | 71.6% |
| 2btqB03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 49.0 | 4.88e-01 | 88.2% | 86.8% |
| 3h1nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 47.0 | 3.65e-01 | 88.2% | 40.0% |
| 3fr3B02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 45.0 | 3.52e-01 | 88.2% | 36.5% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.59 | 48.0 | 4.54e-01 | 88.2% | 88.3% |
| 1bhaA00 | 1.10.287.170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 50.0 | 4.49e-01 | 92.2% | 74.6% |
| 1wp7A00 | 1.10.287.770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like | 0.58 | 49.0 | 4.52e-01 | 92.2% | 98.4% |
| 1v07A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 44.0 | 3.67e-01 | 100.0% | 52.7% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.55 | 47.0 | 4.09e-01 | 94.1% | 62.8% |
| 3v5uA01 | 6.10.280.80 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › NCX, peripheral helical region | 0.54 | 46.0 | 4.07e-01 | 96.1% | 75.0% |
| 2wmmA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.53 | 46.0 | 4.78e-01 | 100.0% | 100.0% |
| 3r84A00 | 1.10.287.3490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 45.0 | 3.89e-01 | 96.1% | 88.9% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.51 | 40.0 | 4.02e-01 | 94.1% | 87.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3413935 | 108.1.1.97 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_7 | 0.80 | 65.0 | 5.40e-01 | 90.2% | 51.1% |
| 3919989 | 192.5.1.19 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › OCIA | 0.79 | 70.0 | 5.99e-01 | 100.0% | 63.7% |
| 3401669 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.76 | 66.0 | 4.09e-01 | 100.0% | 16.7% |
| 3468296 | 148.1.1.25 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Tim17 | 0.74 | 63.0 | 4.74e-01 | 98.0% | 50.8% |
| 3602986 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.72 | 64.0 | 5.20e-01 | 100.0% | 56.8% |
| 3935681 | 3664.1.1.0 ↗ | alpha arrays › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C › Small, acid-soluble spore protein C | 0.71 | 59.0 | 6.00e-01 | 96.1% | 96.0% |
| 3621479 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.69 | 58.0 | 5.03e-01 | 100.0% | 60.0% |
| 3764064 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.69 | 56.0 | 4.84e-01 | 98.0% | 56.5% |
| 3582958 | 864.1.1.2 ↗ | a+b two layers › DLC › DLC › DLC › Tctex-1 | 0.68 | 54.0 | 4.22e-01 | 100.0% | 39.2% |
| 4075392 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.68 | 58.0 | 3.76e-01 | 100.0% | 24.3% |
| 3266039 | 632.3.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain | 0.67 | 54.0 | 5.71e-01 | 94.1% | 100.0% |
| 4981035 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.67 | 56.0 | 5.24e-01 | 96.1% | 92.3% |
| 3843583 | 3720.1.1.1 ↗ | alpha bundles › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › RAMP | 0.65 | 50.0 | 4.25e-01 | 86.3% | 47.8% |
| 3781350 | 5041.1.1.20 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › PF26669 | 0.65 | 50.0 | 3.98e-01 | 94.1% | 38.3% |
| 3285244 | 5063.1.1.19 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › DUF2277 | 0.64 | 50.0 | 5.25e-01 | 92.2% | 100.0% |
| 3800210 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.64 | 54.0 | 5.04e-01 | 100.0% | 87.7% |
| 3491670 | 614.1.1.0 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain | 0.63 | 52.0 | 5.17e-01 | 94.1% | 92.7% |
| 3598538 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.63 | 48.0 | 4.43e-01 | 82.4% | 66.2% |
| 5047182 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 51.0 | 4.78e-01 | 94.1% | 80.0% |
| 3331809 | 375.1.9.23 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Zinc-nucleated domain of serine integrase › Sterile | 0.61 | 53.0 | 3.68e-01 | 100.0% | 31.4% |
| 4561219 | 2486.1.1.3 ↗ | a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans | 0.61 | 52.0 | 3.26e-01 | 100.0% | 70.2% |
| 3447846 | 5010.1.1.6 ↗ | extended segments › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › Bacterial aa3 type cytochrome c oxidase subunit IV › SPC12 | 0.60 | 46.0 | 4.75e-01 | 86.3% | 89.6% |
| 5058468 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.60 | 48.0 | 4.43e-01 | 98.0% | 68.0% |
| 2636645 | 192.15.1.2 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Mod_r | 0.59 | 49.0 | 4.42e-01 | 88.2% | 73.1% |
| 3495293 | 1203.1.2.0 ↗ | alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 | 0.56 | 50.0 | 3.60e-01 | 98.0% | 65.0% |
| 3662533 | 603.1.1.138 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › BPS1 | 0.54 | 46.0 | 3.81e-01 | 94.1% | 54.4% |