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MN096357.1__QDK01328.1__SEA_WATERT_58__00058
Bact-VirMN096357.1__QDK01328.1__SEA_WATERT_58__00058
Identity
- Accession:
- MN096357 ↗
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-152
Domain cluster:
rep: MW055913.1__QPX62624.1__SEA_WOLLYPOG_75__00075__D12-130_220-238
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dkwA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.71 | 46.0 | 4.18e-01 | 100.0% | 51.0% |
| 1okjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.68 | 37.0 | 4.58e-01 | 98.7% | 84.2% |
| 3cerC01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.61 | 43.0 | 4.61e-01 | 100.0% | 85.2% |
| 3a58A01 | 2.30.29.90 | Mainly Beta › Roll › PH-domain like › | 0.55 | 30.0 | 2.95e-01 | 98.0% | 44.3% |
| 4mdaA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 36.0 | 3.31e-01 | 100.0% | 55.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4610182 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.74 | 50.0 | 4.58e-01 | 98.7% | 54.7% |
| 4414942 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.73 | 51.0 | 5.00e-01 | 100.0% | 66.9% |
| 4638438 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.72 | 50.0 | 4.91e-01 | 100.0% | 66.3% |
| 5080207 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 45.0 | 4.07e-01 | 100.0% | 50.5% |
| 3927497 | 2484.5.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 | 0.65 | 33.0 | 4.48e-01 | 70.4% | 93.8% |
| 3940510 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.62 | 33.0 | 4.47e-01 | 71.7% | 97.5% |
| 3351473 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.62 | 31.0 | 4.26e-01 | 99.3% | 92.5% |
| 4467784 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.62 | 46.0 | 4.59e-01 | 100.0% | 74.8% |
| 5020335 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.58 | 42.0 | 4.58e-01 | 100.0% | 90.4% |
| 3876259 | 2484.1.1.15 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › GDA1_CD39 | 0.57 | 44.0 | 4.10e-01 | 100.0% | 64.2% |
| 4975528 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 45.0 | 4.63e-01 | 99.3% | 86.2% |
| 3986557 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.57 | 38.0 | 4.30e-01 | 99.3% | 89.6% |
| 4974435 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.56 | 26.0 | 3.16e-01 | 89.5% | 66.3% |
| 3218937 | 207.1.1.52 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 | 0.56 | 43.0 | 3.68e-01 | 100.0% | 51.2% |
| 3923656 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.54 | 38.0 | 4.02e-01 | 100.0% | 78.6% |
| 3924494 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.54 | 38.0 | 4.34e-01 | 98.7% | 94.8% |
| 5024208 | 2484.1.1.23 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydantoinase_A | 0.54 | 42.0 | 4.41e-01 | 99.3% | 91.1% |
| 4135638 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.54 | 42.0 | 4.45e-01 | 98.0% | 91.1% |
| 4660064 | 2484.1.1.37 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase | 0.53 | 40.0 | 4.37e-01 | 99.3% | 92.3% |
| 3507332 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.52 | 38.0 | 4.02e-01 | 100.0% | 82.1% |
| 3961936 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 33.0 | 3.55e-01 | 78.3% | 76.0% |
D2
medium
residues 153-226
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1bvp101 | 1.10.250.10 | Mainly Alpha › Orthogonal Bundle › Bluetongue Virus 10, subunit 1; domain 1 › Bluetongue Virus 10, subunit 1, domain 1 | 0.59 | 50.0 | 4.30e-01 | 95.9% | 76.7% |
| 2gxaE01 | 1.10.10.510 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain | 0.57 | 37.0 | 3.80e-01 | 74.3% | 68.5% |
| 2do9A01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.57 | 44.0 | 4.26e-01 | 95.9% | 76.2% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.54 | 34.0 | 3.21e-01 | 78.4% | 52.2% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.50 | 42.0 | 3.30e-01 | 100.0% | 83.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4936234 | 3542.1.1.2 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › SPP | 0.58 | 49.0 | 3.55e-01 | 98.6% | 32.0% |
| 3630347 | 5073.1.2.14 ↗ | alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › Gaa1 | 0.55 | 48.0 | 3.42e-01 | 100.0% | 62.6% |
| 3989860 | 191.1.1.12 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_8 | 0.53 | 39.0 | 3.54e-01 | 78.4% | 59.0% |
| 3602154 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.52 | 44.0 | 3.11e-01 | 100.0% | 28.6% |
| 4964374 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.50 | 34.0 | 3.15e-01 | 98.6% | 50.5% |