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MN096357.1__QDK01360.1__SEA_WATERT_91__00090

Bact-Vir

MN096357.1__QDK01360.1__SEA_WATERT_91__00090

Identity

Accession:
MN096357 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-52
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.83 60.0 4.99e-01 78.6% 46.6%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.78 58.0 4.58e-01 83.3% 40.4%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 52.0 4.72e-01 90.5% 50.8%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 57.0 4.87e-01 100.0% 52.1%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 4.56e-01 100.0% 41.7%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 48.0 4.23e-01 73.8% 45.3%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 58.0 5.60e-01 100.0% 80.4%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 57.0 5.19e-01 100.0% 66.1%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 59.0 4.93e-01 100.0% 62.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 60.0 5.51e-01 100.0% 73.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 53.0 5.24e-01 100.0% 80.4%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 53.0 5.12e-01 100.0% 72.5%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.31e-01 100.0% 76.0%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.69 55.0 5.00e-01 100.0% 64.4%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 4.96e-01 100.0% 71.2%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.69 57.0 4.51e-01 100.0% 52.6%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 58.0 5.16e-01 100.0% 67.7%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.67 51.0 4.86e-01 85.7% 80.4%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 55.0 5.20e-01 100.0% 79.2%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 56.0 5.31e-01 100.0% 82.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 54.0 5.32e-01 100.0% 91.5%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 53.0 4.81e-01 100.0% 76.6%
2vd5B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 49.0 3.25e-01 92.9% 19.3%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 4.93e-01 100.0% 88.3%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.63 49.0 4.30e-01 100.0% 56.1%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 53.0 4.56e-01 100.0% 77.1%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.33e-01 100.0% 51.8%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 45.0 3.65e-01 100.0% 37.8%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 53.0 3.25e-01 97.6% 47.1%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 49.0 4.59e-01 100.0% 83.1%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.62 49.0 3.79e-01 100.0% 38.8%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 53.0 4.62e-01 100.0% 77.9%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.60 48.0 4.15e-01 100.0% 73.7%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 49.0 3.09e-01 97.6% 56.9%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.59 44.0 3.89e-01 92.9% 96.1%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.59 42.0 3.03e-01 85.7% 76.3%
1p38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 48.0 3.48e-01 100.0% 30.5%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 4.15e-01 92.9% 93.8%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.58 45.0 3.00e-01 100.0% 23.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 44.0 4.04e-01 92.9% 63.9%
1mknA00 2.20.60.10 Mainly Beta › Single Sheet › Heparin-binding Growth Factor, Midkine; Chain A › Pleiotrophin/Midkine, N-terminal domain 0.57 41.0 3.88e-01 88.1% 64.4%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.57 44.0 4.18e-01 100.0% 73.2%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 47.0 2.94e-01 100.0% 21.3%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.56 39.0 4.02e-01 76.2% 82.1%
2kd3A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.54 44.0 3.52e-01 100.0% 77.3%
1rybA00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.54 39.0 2.72e-01 97.6% 20.4%
3nuhB03 3.10.20.690 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 39.0 3.31e-01 90.5% 84.3%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 38.0 3.41e-01 100.0% 77.5%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 41.0 3.10e-01 100.0% 35.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079728 208.1.1.1 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep 0.82 64.0 4.11e-01 95.2% 19.0%
5032251 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 58.0 5.72e-01 92.9% 77.8%
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.75 57.0 5.28e-01 100.0% 65.5%
4636455 375.1.1.299 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.75 64.0 6.29e-01 100.0% 93.3%
5079023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 53.0 5.29e-01 97.6% 73.3%
4177200 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.74 62.0 5.72e-01 100.0% 72.7%
3592013 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 61.0 4.58e-01 100.0% 53.9%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 62.0 4.92e-01 100.0% 53.3%
3926179 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 5.53e-01 100.0% 75.4%
3976834 4.1.1.156 beta barrels › SH3 › SH3 › SH3 › DUF2158 0.72 56.0 5.36e-01 100.0% 74.0%
4950397 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 47.0 4.38e-01 71.4% 50.9%
3581896 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.72 59.0 5.19e-01 100.0% 61.5%
3240406 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.71 58.0 4.31e-01 100.0% 34.8%
3308545 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.71 61.0 4.13e-01 100.0% 28.7%
3456496 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.71 61.0 4.49e-01 100.0% 36.5%
4946886 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 52.0 5.03e-01 95.2% 70.0%
5001589 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.71 59.0 4.59e-01 100.0% 50.0%
5074039 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 4.99e-01 100.0% 66.7%
3841414 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.70 59.0 5.12e-01 100.0% 64.3%
959119 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.70 61.0 5.65e-01 100.0% 77.8%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.70 58.0 5.39e-01 100.0% 74.1%
1793524 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.70 59.0 4.61e-01 100.0% 54.5%
3323530 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.70 58.0 5.18e-01 100.0% 73.8%
3721794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.07e-01 100.0% 65.0%
4937705 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.70 58.0 4.65e-01 100.0% 55.6%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.11e-01 100.0% 66.7%
4932696 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.69 57.0 4.48e-01 100.0% 50.0%
3749631 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.69 54.0 4.05e-01 95.2% 35.2%
3896519 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.44e-01 100.0% 96.0%
2893010 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.68 55.0 5.12e-01 100.0% 72.2%
4629022 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.68 55.0 4.70e-01 100.0% 55.7%
3240407 4.1.1.237 beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 0.68 57.0 4.94e-01 100.0% 68.6%
4932493 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 58.0 5.04e-01 100.0% 63.1%
3461921 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.68 56.0 4.39e-01 100.0% 49.0%
5051313 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 56.0 4.95e-01 100.0% 67.7%
4956196 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.67 53.0 4.64e-01 100.0% 58.5%
158943 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 53.0 4.52e-01 100.0% 62.0%
3732527 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 47.0 4.86e-01 90.5% 100.0%
4404324 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 55.0 4.42e-01 100.0% 48.2%
3258369 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 49.0 5.00e-01 97.6% 97.4%
3938908 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 56.0 4.74e-01 100.0% 62.9%
5065528 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.64 47.0 4.09e-01 100.0% 50.0%
3245798 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 49.0 2.58e-01 95.2% 2.6%
137916 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.64 55.0 4.80e-01 100.0% 81.5%
4972400 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 54.0 5.38e-01 100.0% 95.6%
3230400 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.57e-01 100.0% 81.5%
4084890 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 51.0 4.59e-01 100.0% 89.2%
3469800 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 49.0 4.22e-01 100.0% 61.3%
4027309 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.61 45.0 3.66e-01 100.0% 38.9%
3698212 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.61 52.0 3.06e-01 100.0% 28.8%
3512214 206.1.1.70 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.61 50.0 2.71e-01 100.0% 4.8%
3331569 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.61 47.0 4.49e-01 97.6% 72.7%
3922674 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.60 42.0 2.56e-01 76.2% 36.1%
4474739 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 50.0 4.25e-01 100.0% 62.7%
3265225 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 50.0 3.00e-01 100.0% 29.9%
3791430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.39e-01 97.6% 87.3%
5068449 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.58 44.0 3.41e-01 90.5% 91.8%
3405538 219.1.1.111 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core, Rad4 0.57 42.0 2.69e-01 95.2% 13.6%
5063409 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.57 48.0 3.12e-01 100.0% 63.4%
3723588 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.56 46.0 2.78e-01 97.6% 46.6%
None 0.56 45.0 2.67e-01 97.6% 36.9%
5050109 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.53 41.0 3.48e-01 97.6% 56.5%
4411726 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.53 42.0 3.83e-01 100.0% 70.8%
4972785 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 40.0 3.96e-01 100.0% 98.0%
3425088 145.1.1.3 alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.51 39.0 3.52e-01 90.5% 73.8%