←Back to structures
MN096357.1__QDK01386.1__SEA_WATERT_119__00118
Bact-VirMN096357.1__QDK01386.1__SEA_WATERT_119__00118
Identity
- Accession:
- MN096357 ↗
- Kingdom:
- phage
Quality
69.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-76
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1f5qB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.73 | 50.0 | 4.39e-01 | 71.6% | 64.2% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.71 | 50.0 | 4.31e-01 | 73.0% | 69.3% |
| 2ivxB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.70 | 51.0 | 4.10e-01 | 75.7% | 49.3% |
| 1nxhA00 | 1.10.3070.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein MTH393 › EhaM-like | 0.70 | 50.0 | 4.24e-01 | 75.7% | 54.0% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.69 | 49.0 | 4.18e-01 | 74.3% | 72.9% |
| 4limA00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.68 | 44.0 | 2.80e-01 | 83.8% | 12.9% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.66 | 49.0 | 4.09e-01 | 77.0% | 74.6% |
| 4ae4A00 | 1.20.120.1920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UBAP1 SOUBA domain | 0.66 | 52.0 | 4.55e-01 | 95.9% | 56.1% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.65 | 49.0 | 4.28e-01 | 79.7% | 65.5% |
| 2kp7A01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.64 | 45.0 | 4.57e-01 | 74.3% | 75.7% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.64 | 45.0 | 4.18e-01 | 75.7% | 70.1% |
| 1yisA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.63 | 45.0 | 3.00e-01 | 75.7% | 28.0% |
| 2f3oA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.63 | 46.0 | 2.66e-01 | 78.4% | 58.6% |
| 6zhiB02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.63 | 45.0 | 4.35e-01 | 75.7% | 77.1% |
| 5tj5E00 | 1.20.120.610 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase | 0.63 | 44.0 | 3.62e-01 | 74.3% | 64.5% |
| 3vwaA02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.62 | 41.0 | 3.31e-01 | 77.0% | 34.3% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.62 | 46.0 | 3.90e-01 | 81.1% | 62.5% |
| 2vpzC00 | 1.20.1630.10 | Mainly Alpha › Up-down Bundle › Formate dehydrogenase/DMSO reductase fold › Formate dehydrogenase/DMSO reductase domain | 0.61 | 43.0 | 3.03e-01 | 75.7% | 26.8% |
| 3f5cB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.60 | 43.0 | 3.23e-01 | 75.7% | 59.0% |
| 2g3bA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.59 | 43.0 | 3.28e-01 | 78.4% | 52.4% |
| 1p8dB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.59 | 45.0 | 3.24e-01 | 85.1% | 65.7% |
| 1kxpD04 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.59 | 43.0 | 4.28e-01 | 78.4% | 94.8% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.59 | 43.0 | 4.08e-01 | 79.7% | 91.2% |
| 4y7dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 42.0 | 2.80e-01 | 75.7% | 20.4% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 39.0 | 3.82e-01 | 73.0% | 73.8% |
| 5xnyA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.57 | 44.0 | 3.98e-01 | 86.5% | 65.4% |
| 3fvvA02 | 1.20.1440.100 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › SG protein - dephosphorylation function | 0.57 | 40.0 | 4.05e-01 | 79.7% | 74.7% |
| 4axzA00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.56 | 49.0 | 3.56e-01 | 100.0% | 59.2% |
| 1xvpB00 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.56 | 45.0 | 3.15e-01 | 89.2% | 76.4% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.56 | 46.0 | 4.51e-01 | 100.0% | 96.5% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 47.0 | 4.21e-01 | 98.6% | 99.1% |
| 4yzrA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 43.0 | 2.73e-01 | 87.8% | 30.2% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 39.0 | 3.41e-01 | 98.6% | 50.0% |
| 6nmnA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 39.0 | 3.35e-01 | 98.6% | 46.9% |
| 1f5qB02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.53 | 44.0 | 3.71e-01 | 98.6% | 63.8% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 35.0 | 3.70e-01 | 71.6% | 89.2% |
| 2w0gA00 | 1.20.58.610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain | 0.51 | 39.0 | 3.39e-01 | 86.5% | 56.6% |
| 2f2cA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.50 | 42.0 | 3.78e-01 | 95.9% | 95.3% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4651138 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.76 | 50.0 | 5.54e-01 | 79.7% | 83.3% |
| 5000678 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.74 | 51.0 | 4.61e-01 | 71.6% | 67.0% |
| 4027655 | 5069.1.3.23 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › DAD | 0.69 | 51.0 | 4.65e-01 | 78.4% | 82.0% |
| 4013752 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 59.0 | 5.44e-01 | 98.6% | 74.7% |
| 3689909 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 53.0 | 5.59e-01 | 86.5% | 98.4% |
| 3727291 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 57.0 | 5.74e-01 | 98.6% | 93.3% |
| 4183142 | 11.1.1.154 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GlgE_dom_N_S | 0.67 | 44.0 | 3.24e-01 | 74.3% | 25.6% |
| 3431012 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.65 | 45.0 | 4.09e-01 | 71.6% | 69.0% |
| 3613288 | 1189.1.1.0 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor | 0.64 | 45.0 | 3.00e-01 | 74.3% | 80.7% |
| 3192559 | 148.1.3.216 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7069 | 0.64 | 56.0 | 5.42e-01 | 100.0% | 87.1% |
| 3610544 | 1189.1.1.0 ↗ | alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor | 0.64 | 45.0 | 3.09e-01 | 75.7% | 79.3% |
| 3184515 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.63 | 56.0 | 5.17e-01 | 100.0% | 77.9% |
| 5036418 | 148.1.3.50 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Cdc6_lid | 0.63 | 55.0 | 4.82e-01 | 97.3% | 70.9% |
| 5047984 | 633.15.1.2 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › Alpha_Helical | 0.63 | 44.0 | 3.84e-01 | 75.7% | 59.2% |
| 4137969 | 610.3.1.1 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey | 0.62 | 54.0 | 4.02e-01 | 94.6% | 42.2% |
| 5059610 | 148.1.3.403 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RNA_pol_Rpb1_5 | 0.61 | 52.0 | 4.11e-01 | 98.6% | 45.2% |
| 3328080 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.61 | 44.0 | 4.01e-01 | 75.7% | 93.0% |
| 4165971 | 632.22.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA | 0.61 | 42.0 | 3.87e-01 | 73.0% | 83.0% |
| 3722693 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.61 | 45.0 | 3.45e-01 | 89.2% | 36.8% |
| 3511765 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.60 | 43.0 | 3.99e-01 | 77.0% | 94.7% |
| 3382641 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.59 | 51.0 | 4.55e-01 | 100.0% | 91.8% |
| 3982634 | 192.29.1.155 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF1722 | 0.59 | 41.0 | 4.09e-01 | 74.3% | 68.8% |
| 3269107 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.58 | 43.0 | 3.18e-01 | 79.7% | 70.7% |
| 3317710 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.58 | 48.0 | 4.01e-01 | 100.0% | 82.0% |
| 3796068 | 148.1.3.40 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ORC5_lid | 0.58 | 49.0 | 4.54e-01 | 97.3% | 82.1% |
| 3358229 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.58 | 45.0 | 3.91e-01 | 85.1% | 67.0% |
| 3816369 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 49.0 | 4.79e-01 | 100.0% | 90.0% |
| 2085920 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.57 | 47.0 | 3.07e-01 | 93.2% | 94.0% |
| 4167109 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.57 | 49.0 | 3.03e-01 | 100.0% | 27.4% |
| 3315624 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 40.0 | 3.56e-01 | 74.3% | 78.2% |
| 3285578 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.56 | 45.0 | 4.00e-01 | 89.2% | 62.7% |
| 3422252 | 611.1.1.1 ↗ | alpha bundles › N-cbl like › Transferrin receptor ectodomain, C-terminal domain › Transferrin receptor ectodomain, C-terminal domain › TFR_dimer | 0.55 | 50.0 | 3.91e-01 | 100.0% | 98.7% |
| 5082746 | 604.12.1.143 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF26604 | 0.54 | 34.0 | 3.40e-01 | 98.6% | 60.0% |
| 3335816 | 650.1.1.1 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ | 0.53 | 38.0 | 3.61e-01 | 78.4% | 78.9% |
| 4297683 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.53 | 43.0 | 2.79e-01 | 98.6% | 93.3% |
| 3245115 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 45.0 | 3.37e-01 | 100.0% | 96.5% |
| 4883119 | 601.32.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FusB family N-terminal domain › FusB family N-terminal domain › EF-G-binding_N | 0.51 | 35.0 | 3.21e-01 | 71.6% | 52.4% |
| 3241203 | 544.1.1.0 ↗ | alpha bundles › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 › Functional domain of the splicing factor Prp18 | 0.51 | 36.0 | 3.20e-01 | 77.0% | 56.7% |
| 3345767 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.51 | 41.0 | 3.56e-01 | 93.2% | 81.6% |
| 3180530 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.51 | 41.0 | 3.61e-01 | 89.2% | 73.6% |