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MN096362.1__QDK01921.1__SEA_VIBAKI_41__00041

Bact-Vir

MN096362.1__QDK01921.1__SEA_VIBAKI_41__00041

Identity

Accession:
MN096362 ↗
Kingdom:
phage

Quality

73.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-76
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2r4fA03 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.73 58.0 4.65e-01 86.9% 52.1%
3aqoA01 3.30.70.3400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 52.0 4.79e-01 82.0% 63.7%
4e9jA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.66 50.0 4.81e-01 82.0% 73.9%
4wxaA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.66 50.0 4.50e-01 85.2% 58.3%
1fvqA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 46.0 4.42e-01 82.0% 63.9%
3oreA01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.66 49.0 4.79e-01 82.0% 74.2%
3cx5B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.65 49.0 3.84e-01 82.0% 39.3%
4eadA03 3.90.1170.30 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Pyrimidine nucleoside phosphorylase-like, C-terminal domain 0.64 42.0 3.59e-01 77.0% 42.3%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 47.0 3.47e-01 82.0% 62.4%
3encA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.64 48.0 4.40e-01 85.2% 62.0%
2o0bA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.64 47.0 3.29e-01 100.0% 23.3%
1x9zA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.63 43.0 3.87e-01 86.9% 49.4%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 47.0 4.02e-01 80.3% 72.4%
3jr1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 45.0 3.93e-01 80.3% 53.5%
4fqdA01 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.61 45.0 3.15e-01 100.0% 23.1%
4qmfB01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 43.0 3.98e-01 80.3% 57.3%
3onqA02 3.30.70.2730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 41.0 3.88e-01 83.6% 58.0%
3fvcA02 1.20.5.1890 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.58 43.0 3.66e-01 80.3% 97.0%
2mz0A00 3.30.30.10 Alpha Beta › 2-Layer Sandwich › Defensin A-like › Knottin, scorpion toxin-like 0.57 40.0 4.20e-01 82.0% 85.5%
4itjB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 47.0 4.29e-01 98.4% 76.1%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.56 48.0 3.42e-01 100.0% 97.0%
4x0qA03 3.30.70.370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 40.0 3.23e-01 83.6% 37.8%
1xkpB00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 45.0 3.69e-01 95.1% 50.4%
2wp4B00 3.90.1170.40 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Molybdopterin biosynthesis MoaE subunit 0.54 41.0 3.23e-01 82.0% 58.3%
2mzwA01 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.54 40.0 3.77e-01 86.9% 64.5%
1kskA02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.54 44.0 3.37e-01 96.7% 48.5%
2rghA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.54 39.0 2.92e-01 78.7% 41.1%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 4.24e-01 98.4% 77.4%
1jw3A00 3.55.10.10 Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain 0.53 45.0 3.56e-01 100.0% 97.9%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 41.0 3.38e-01 86.9% 95.8%
5dx9A01 3.30.70.1020 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trehalose-6-phosphate phosphatase related protein; domain 2 0.53 44.0 4.26e-01 100.0% 95.8%
2ma4A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.53 39.0 3.68e-01 82.0% 64.1%
3fpwA01 3.30.450.150 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain 0.53 40.0 3.20e-01 83.6% 64.8%
6fucA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 41.0 3.81e-01 96.7% 73.3%
5gt8D02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.51 42.0 3.42e-01 95.1% 91.0%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988647 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.73 56.0 5.17e-01 86.9% 65.3%
4971598 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.73 55.0 5.15e-01 85.2% 65.3%
3231349 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.73 54.0 4.72e-01 85.2% 53.3%
4945658 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.73 55.0 4.91e-01 86.9% 59.0%
2834102 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.72 57.0 5.05e-01 85.2% 61.6%
3865044 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.70 53.0 4.68e-01 86.9% 55.7%
5027876 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.70 54.0 4.92e-01 86.9% 62.5%
4972531 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.70 53.0 4.81e-01 85.2% 61.3%
3313948 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.70 52.0 4.70e-01 85.2% 60.0%
5045251 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.70 53.0 4.84e-01 86.9% 62.5%
4943788 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.69 52.0 4.78e-01 86.9% 62.5%
4975956 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.69 51.0 4.60e-01 86.9% 57.6%
4976196 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.69 51.0 4.69e-01 85.2% 61.3%
3389472 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.69 51.0 4.71e-01 86.9% 61.3%
5042213 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 52.0 4.74e-01 86.9% 62.5%
3488179 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 51.0 4.50e-01 85.2% 54.4%
4231530 304.48.1.3 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.68 51.0 3.55e-01 82.0% 60.5%
5066537 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.68 51.0 4.52e-01 86.9% 55.6%
3742389 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.68 52.0 4.74e-01 86.9% 62.5%
None 0.68 51.0 2.90e-01 82.0% 26.8%
3603014 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.68 50.0 4.57e-01 82.0% 60.0%
5013852 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.67 53.0 4.75e-01 85.2% 62.4%
5030527 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.67 51.0 4.62e-01 86.9% 61.3%
4927268 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.67 51.0 4.61e-01 85.2% 61.3%
3703843 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.67 50.0 4.53e-01 82.0% 60.0%
4962898 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.67 51.0 4.48e-01 85.2% 56.2%
3552384 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.67 50.0 4.43e-01 86.9% 55.7%
5032609 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.67 50.0 4.66e-01 86.9% 65.3%
4118092 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.66 50.0 4.74e-01 83.6% 68.0%
5017294 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 47.0 4.39e-01 88.5% 61.3%
5047612 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 48.0 4.54e-01 85.2% 64.0%
4987052 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.66 48.0 4.48e-01 83.6% 62.7%
5023065 304.28.1.4 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD_1st 0.66 50.0 4.52e-01 83.6% 60.0%
4977599 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.65 48.0 4.38e-01 85.2% 58.3%
4948386 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.65 50.0 4.61e-01 86.9% 63.7%
4948292 4954.1.1.1 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 0.65 49.0 3.58e-01 85.2% 30.6%
4928119 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.64 47.0 4.46e-01 85.2% 65.3%
4011868 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.64 48.0 4.50e-01 86.9% 66.7%
3437479 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.63 54.0 5.30e-01 96.7% 89.2%
5006953 873.1.1.12 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF27313 0.63 55.0 4.71e-01 100.0% 72.0%
4954520 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.63 47.0 4.38e-01 85.2% 62.5%
5016597 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.62 53.0 4.55e-01 100.0% 58.1%
3210821 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.62 46.0 4.39e-01 86.9% 66.7%
3511024 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.62 48.0 4.12e-01 85.2% 53.0%
3231421 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 46.0 4.27e-01 83.6% 62.5%
3659690 387.1.5.31 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › PF29352 0.61 45.0 4.85e-01 88.5% 96.0%
3478289 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.61 44.0 4.68e-01 77.0% 100.0%
4968681 304.57.1.0 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like 0.61 44.0 3.81e-01 78.7% 52.0%
4986705 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.61 45.0 3.80e-01 82.0% 50.9%
4980122 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.61 45.0 3.71e-01 82.0% 45.8%
4931425 304.57.1.1 a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like › RNase_P_Rpp14 0.60 44.0 3.75e-01 82.0% 51.8%
3241665 327.11.2.5 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_8 0.60 44.0 3.81e-01 85.2% 47.6%
3597940 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.60 45.0 4.03e-01 86.9% 56.7%
3227268 309.1.1.23 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C, Peptidase_M16_M, PqqF-like_C_4 0.59 44.0 2.67e-01 82.0% 12.9%
3635087 327.11.2.60 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_SLS1_2 0.59 44.0 3.61e-01 80.3% 44.2%
4629319 304.55.1.13 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Relaxase 0.59 45.0 3.72e-01 86.9% 47.5%
3931915 309.1.1.11 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PqqF-like_C_4 0.58 43.0 2.97e-01 82.0% 27.0%
3691834 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.58 39.0 3.39e-01 88.5% 41.9%
5038167 256.1.1.1 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › Archease 0.58 43.0 3.49e-01 86.9% 40.3%
3260223 304.128.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.58 46.0 4.03e-01 88.5% 66.3%
4396101 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 46.0 2.80e-01 91.8% 15.7%
3480546 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.57 46.0 3.03e-01 90.2% 27.2%
3981156 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 42.0 3.61e-01 82.0% 49.0%
5043133 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 47.0 4.01e-01 98.4% 60.0%
3662916 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.56 47.0 3.65e-01 96.7% 72.4%
394278 304.122.1.1 a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 0.56 42.0 3.99e-01 85.2% 87.0%
3602709 241.15.1.6 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PF27355 0.55 40.0 3.02e-01 82.0% 30.0%
4926933 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 48.0 4.60e-01 100.0% 93.2%
4064881 241.1.1.7 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Type_III_SycN 0.55 45.0 3.71e-01 96.7% 65.0%
4949617 210.1.3.0 a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.55 43.0 3.13e-01 91.8% 29.7%
4588604 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.54 43.0 2.85e-01 90.2% 53.7%
3603042 241.1.1.27 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF27355 0.52 38.0 2.84e-01 82.0% 28.6%
3368395 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 38.0 2.48e-01 82.0% 15.9%