←Back to structures

MN096363.1__QDK02050.1__SEA_GIBBLES_91__00091

Bact-Vir

MN096363.1__QDK02050.1__SEA_GIBBLES_91__00091

Identity

Accession:
MN096363 ↗
Kingdom:
phage

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Orchidvirus› Gordonia_phage_Gibbles

TaxID: 2593334

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-100
PDB
Domain cluster: rep: ON191531.1__URG17458.1__Mbo2_088__00088__D20-99
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 55.0 6.34e-01 85.4% 100.0%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 6.10e-01 82.0% 100.0%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.75 50.0 5.74e-01 71.9% 95.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.93e-01 89.9% 98.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.73 51.0 5.32e-01 77.5% 78.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 43.0 4.95e-01 70.8% 83.1%
2f5tX02 2.30.30.690 Mainly Beta › Roll › SH3 type barrels. › 0.70 56.0 5.62e-01 85.4% 97.8%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 4.68e-01 80.9% 60.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.70 50.0 5.40e-01 78.7% 87.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 45.0 4.83e-01 74.2% 78.9%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 44.0 4.28e-01 77.5% 59.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.67 58.0 5.49e-01 93.3% 80.8%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 5.28e-01 83.1% 97.2%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.04e-01 83.1% 47.0%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 5.02e-01 80.9% 97.2%
4mb7A01 3.20.190.10 Alpha Beta › Alpha-Beta Barrel › N-terminal domain of MutM-like DNA repair proteins › MutM-like, N-terminal 0.62 46.0 4.13e-01 78.7% 67.5%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.61 48.0 4.79e-01 98.9% 81.7%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.96e-01 96.6% 88.0%
2ra6C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 43.0 3.65e-01 75.3% 73.4%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 3.60e-01 73.0% 93.9%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 39.0 3.83e-01 100.0% 63.4%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 41.0 3.55e-01 76.4% 97.2%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.76e-01 74.2% 77.8%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.55 46.0 4.53e-01 92.1% 85.1%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.54 47.0 3.59e-01 96.6% 76.9%
3ba3B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 37.0 3.28e-01 73.0% 89.5%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 37.0 3.21e-01 73.0% 82.8%
1sqjB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.57e-01 79.8% 24.7%
3wbiA04 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 43.0 3.66e-01 88.8% 72.4%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 44.0 3.20e-01 93.3% 95.0%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 38.0 3.30e-01 77.5% 71.8%
4qfwA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 44.0 3.21e-01 94.4% 90.9%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.52 44.0 3.47e-01 94.4% 67.0%
3rd7A00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.52 44.0 3.14e-01 93.3% 99.6%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.63e-01 100.0% 73.2%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 3.41e-01 74.2% 93.8%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 36.0 3.75e-01 79.8% 76.7%
2ovrB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 38.0 2.57e-01 78.7% 24.8%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.51 44.0 3.83e-01 97.8% 92.3%
2rceA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 37.0 3.53e-01 76.4% 89.6%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.51 38.0 3.11e-01 79.8% 72.3%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 37.0 2.66e-01 78.7% 44.8%
3u0aA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.50 43.0 3.09e-01 93.3% 98.0%
2hboA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 43.0 3.77e-01 94.4% 88.7%
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.50 42.0 4.18e-01 98.9% 88.7%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 40.0 3.72e-01 86.5% 91.9%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4264671 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.80 59.0 6.21e-01 85.4% 85.0%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 53.0 6.10e-01 79.8% 98.5%
4183853 4.1.1.435 ↗ beta barrels › SH3 › SH3 › SH3 › PF29216 0.76 57.0 6.30e-01 79.8% 98.6%
3289944 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.76 55.0 5.54e-01 79.8% 75.6%
4118552 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.76 58.0 6.32e-01 86.5% 96.0%
4387099 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 58.0 6.11e-01 80.9% 96.2%
4069560 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 59.0 6.31e-01 83.1% 98.7%
3210897 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 56.0 5.79e-01 79.8% 84.7%
3821287 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.74 56.0 4.76e-01 80.9% 50.7%
4283343 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 59.0 6.16e-01 84.3% 97.5%
3738626 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.74 56.0 4.70e-01 79.8% 55.9%
4272564 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.73 56.0 5.21e-01 79.8% 66.7%
3281271 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.73 54.0 5.41e-01 82.0% 76.7%
4209798 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.73 59.0 6.02e-01 86.5% 100.0%
4358168 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 57.0 5.28e-01 83.1% 68.2%
3232582 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.18e-01 80.9% 71.6%
3942912 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.72 53.0 5.50e-01 79.8% 82.4%
3167531 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.71 54.0 4.65e-01 79.8% 59.3%
5010832 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.71 55.0 5.53e-01 83.1% 97.8%
3713334 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 46.0 5.38e-01 75.3% 100.0%
4668960 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.02e-01 80.9% 65.5%
4484974 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.67e-01 82.0% 88.2%
3959770 4.31.1.0 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.70 50.0 5.06e-01 78.7% 73.3%
3978997 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 53.0 5.22e-01 80.9% 74.7%
3972550 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 53.0 5.15e-01 80.9% 71.0%
3901117 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 47.0 3.71e-01 75.3% 33.9%
3876680 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.70 49.0 4.70e-01 77.5% 64.0%
4251101 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.80e-01 85.4% 91.8%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 53.0 5.33e-01 80.9% 78.9%
3575581 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 53.0 4.29e-01 80.9% 43.0%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.70 53.0 5.14e-01 80.9% 72.0%
4024274 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 53.0 5.07e-01 82.0% 68.6%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.70 53.0 5.73e-01 89.9% 96.0%
4400596 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 53.0 4.37e-01 80.9% 45.0%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.51e-01 77.5% 98.5%
2755606 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.70 53.0 3.86e-01 80.9% 30.9%
4545520 4.7.1.7 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.70 52.0 5.32e-01 79.8% 82.4%
147797 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 45.0 5.02e-01 73.0% 86.8%
3319789 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.69 52.0 5.33e-01 79.8% 83.5%
3953109 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 52.0 5.17e-01 82.0% 75.8%
3283097 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 52.0 4.89e-01 80.9% 66.4%
3477401 4.1.1.17 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.69 52.0 3.75e-01 80.9% 29.0%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 51.0 5.44e-01 80.9% 93.3%
3704395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 46.0 5.26e-01 80.9% 98.4%
3603079 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 57.0 4.72e-01 93.3% 95.0%
608 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.67 58.0 5.49e-01 93.3% 80.8%
2978978 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 48.0 5.15e-01 74.2% 90.7%
4932404 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.67 59.0 4.88e-01 97.8% 75.0%
4936914 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 58.0 5.53e-01 97.8% 87.6%
3719860 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 49.0 4.56e-01 79.8% 65.2%
5032454 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 58.0 5.11e-01 97.8% 76.2%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.65 51.0 4.92e-01 83.1% 89.0%
3188394 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.65 51.0 4.60e-01 83.1% 76.7%
3730229 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.65 44.0 4.70e-01 82.0% 82.7%
165654 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.64 45.0 4.88e-01 80.9% 87.8%
3812766 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 45.0 4.89e-01 80.9% 94.3%
4927266 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.63 45.0 3.73e-01 74.2% 100.0%
3459099 4.1.1.158 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3444 0.63 47.0 4.48e-01 79.8% 74.3%
5027789 4.1.1.30 ↗ beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.62 45.0 4.35e-01 76.4% 80.0%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 43.0 4.81e-01 79.8% 100.0%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.62 46.0 4.77e-01 87.6% 87.5%
1527468 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.61 42.0 3.96e-01 84.3% 57.7%
3714156 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.61e-01 82.0% 83.5%
3712451 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.04e-01 82.0% 56.8%
4055974 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.60 47.0 4.28e-01 86.5% 72.0%
3615838 517.1.1.1 ↗ beta barrels › CBF-like › Core binding factor beta, CBF › Core binding factor beta, CBF › CBF_beta 0.59 47.0 4.08e-01 89.9% 56.3%
3842363 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.59 47.0 4.46e-01 88.8% 79.1%
3218475 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.59 52.0 4.73e-01 98.9% 85.0%
3770803 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.59 47.0 4.44e-01 88.8% 78.2%
3590884 219.1.1.28 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.59 51.0 4.52e-01 100.0% 69.2%
4581369 4.1.1.166 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2314 0.58 45.0 4.29e-01 84.3% 99.0%
3927242 708.1.1.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.58 33.0 3.53e-01 71.9% 62.5%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.57 51.0 4.37e-01 100.0% 86.9%
3608562 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.22e-01 98.9% 67.3%
3829476 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.56 48.0 3.95e-01 97.8% 84.6%
5020997 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 41.0 3.27e-01 76.4% 65.7%
3719783 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.05e-01 80.9% 84.0%
3290224 222.1.1.5 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FabA 0.52 43.0 3.48e-01 92.1% 82.3%
3445812 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 44.0 3.87e-01 98.9% 85.0%
4928817 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.51 37.0 3.18e-01 76.4% 88.7%
4014830 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 32.0 3.75e-01 70.8% 100.0%