←Back to structures
MN096369.1__QDK02727.1__SEA_PHENDRIX_211__00181
Bact-VirMN096369.1__QDK02727.1__SEA_PHENDRIX_211__00181
Identity
- Accession:
- MN096369 ↗
- Kingdom:
- phage
Quality
74.1
mean pLDDT
Taxonomy
TaxID: 2593335
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-69
Domain cluster:
rep: MN234168.1__QFG08733.1__PBI_INGRID_61__00061__D29-92
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1zbdB00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.77 | 54.0 | 4.25e-01 | 90.2% | 36.6% |
| 1fxkC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.71 | 52.0 | 3.98e-01 | 77.0% | 43.6% |
| 3t7lA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 48.0 | 4.52e-01 | 85.2% | 59.5% |
| 4lmoA00 | 1.10.132.70 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.69 | 57.0 | 3.82e-01 | 91.8% | 63.7% |
| 4e1pA00 | 3.30.60.230 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain | 0.68 | 52.0 | 5.40e-01 | 98.4% | 90.9% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 48.0 | 3.61e-01 | 77.0% | 39.2% |
| 3j7aZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.63 | 48.0 | 4.57e-01 | 83.6% | 76.4% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.62 | 48.0 | 4.12e-01 | 83.6% | 56.7% |
| 1x4uA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 48.0 | 4.67e-01 | 88.5% | 75.4% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 3.31e-01 | 98.4% | 31.3% |
| 3h74A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 42.0 | 2.68e-01 | 72.1% | 54.3% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.59 | 43.0 | 3.82e-01 | 78.7% | 78.4% |
| 3uh0A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.58 | 40.0 | 3.17e-01 | 72.1% | 82.3% |
| 3zmdA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 38.0 | 2.90e-01 | 70.5% | 43.2% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.56 | 34.0 | 3.51e-01 | 80.3% | 64.9% |
| 6nw1A00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.56 | 33.0 | 3.69e-01 | 78.7% | 80.0% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 3.56e-01 | 98.4% | 49.0% |
| 4hqeA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.21e-01 | 72.1% | 62.9% |
| 3pg7A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 46.0 | 3.87e-01 | 96.7% | 85.5% |
| 2fd4A00 | 3.30.40.110 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › AvrPtoB, C-terminal domain | 0.54 | 44.0 | 3.76e-01 | 91.8% | 65.7% |
| 6ko5A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 39.0 | 2.50e-01 | 75.4% | 34.6% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 38.0 | 3.25e-01 | 93.4% | 43.7% |
| 4g08A02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.53 | 41.0 | 3.90e-01 | 82.0% | 98.6% |
| 1jndA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.53 | 36.0 | 3.30e-01 | 75.4% | 85.1% |
| 1flcB00 | 3.90.20.10 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › | 0.52 | 35.0 | 2.65e-01 | 70.5% | 70.4% |
| 3l9fA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 34.0 | 3.10e-01 | 70.5% | 79.8% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3493960 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.72 | 48.0 | 4.69e-01 | 85.2% | 64.6% |
| 3489283 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.70 | 52.0 | 3.93e-01 | 78.7% | 44.4% |
| 3302165 | 386.1.1.209 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › WAC_Acf1_DNA_bd | 0.68 | 37.0 | 3.33e-01 | 78.7% | 41.2% |
| 3737932 | 3532.1.1.1 ↗ | alpha arrays › RNA-binding domain of telomerase › RNA-binding domain of telomerase › RNA-binding domain of telomerase › Telomerase_RBD | 0.65 | 52.0 | 3.46e-01 | 90.2% | 62.0% |
| 4203118 | 376.1.1.37 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › SLX1_C | 0.63 | 53.0 | 4.71e-01 | 95.1% | 64.4% |
| 3542550 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 32.0 | 3.39e-01 | 86.9% | 53.7% |
| 3776945 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.62 | 38.0 | 3.53e-01 | 77.0% | 48.1% |
| 3235875 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.61 | 43.0 | 4.15e-01 | 75.4% | 74.3% |
| 3732556 | 376.1.1.16 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › FANCL_C | 0.58 | 48.0 | 4.34e-01 | 96.7% | 68.2% |
| 3535881 | 386.1.1.145 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_ZN142 | 0.58 | 33.0 | 3.44e-01 | 93.4% | 58.2% |
| 4054423 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 33.0 | 3.75e-01 | 78.7% | 77.8% |
| 4885913 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.57 | 33.0 | 3.71e-01 | 78.7% | 77.8% |
| 5067388 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 38.0 | 3.52e-01 | 91.8% | 52.5% |
| 3216971 | 386.1.1.209 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › WAC_Acf1_DNA_bd | 0.57 | 36.0 | 3.29e-01 | 75.4% | 50.0% |
| 4958102 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.55 | 42.0 | 4.16e-01 | 95.1% | 80.0% |
| 3634792 | 376.1.3.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-PHD-like | 0.54 | 40.0 | 3.66e-01 | 82.0% | 57.6% |
| 4945995 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 43.0 | 3.93e-01 | 91.8% | 89.4% |
| 3307036 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.53 | 31.0 | 3.38e-01 | 75.4% | 70.0% |
| 3573007 | 327.11.2.79 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_1, KH_PARP14_2 | 0.53 | 45.0 | 3.45e-01 | 96.7% | 88.7% |
| 3200456 | 376.1.3.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-PHD-like | 0.53 | 41.0 | 3.21e-01 | 83.6% | 42.3% |
| 3223233 | 375.1.1.179 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha | 0.53 | 34.0 | 2.31e-01 | 78.7% | 17.4% |
| 4650116 | 3939.1.1.312 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › DASH_Spc34 | 0.53 | 37.0 | 2.88e-01 | 72.1% | 60.8% |
| None | — | 0.52 | 34.0 | 2.77e-01 | 88.5% | 36.5% | |
| 3440950 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.51 | 30.0 | 3.46e-01 | 75.4% | 87.5% |
| 4945099 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 34.0 | 2.79e-01 | 70.5% | 56.0% |
| 5073530 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.50 | 44.0 | 3.11e-01 | 100.0% | 87.7% |