←Back to structures
MN096370.1__QDK02803.1__SEA_SQUIDDLY_52__00052
Bact-VirMN096370.1__QDK02803.1__SEA_SQUIDDLY_52__00052
Identity
- Accession:
- MN096370 ↗
- Kingdom:
- phage
Quality
70.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-108
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.68 | 45.0 | 5.00e-01 | 80.5% | 88.1% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.62 | 44.0 | 4.77e-01 | 82.8% | 90.3% |
| 3lcnB00 | 1.10.340.40 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain | 0.59 | 41.0 | 4.00e-01 | 83.9% | 66.0% |
| 2bnlC00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 52.0 | 4.49e-01 | 98.9% | 83.6% |
| 1juqC00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 41.0 | 3.46e-01 | 74.7% | 96.6% |
| 3djbA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.57 | 48.0 | 4.75e-01 | 98.9% | 93.8% |
| 7d5qA01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.56 | 44.0 | 3.53e-01 | 87.4% | 89.0% |
| 1o2dA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.56 | 47.0 | 3.84e-01 | 98.9% | 95.0% |
| 1r4aE00 | 1.10.220.60 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › GRIP domain | 0.55 | 32.0 | 3.96e-01 | 75.9% | 98.0% |
| 7smgD00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.55 | 47.0 | 4.11e-01 | 100.0% | 76.1% |
| 2i5uA00 | 1.10.10.630 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DnaD domain-like | 0.54 | 42.0 | 4.47e-01 | 96.6% | 96.1% |
| 3o4yA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 32.0 | 2.97e-01 | 95.4% | 45.5% |
| 3iv7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.54 | 47.0 | 3.66e-01 | 98.9% | 90.8% |
| 2c9kA01 | 1.20.190.10 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain | 0.53 | 43.0 | 3.22e-01 | 89.7% | 79.1% |
| 1rrmA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.53 | 44.0 | 3.55e-01 | 98.9% | 97.0% |
| 3rf7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.53 | 44.0 | 3.70e-01 | 98.9% | 97.7% |
| 3jsbA01 | 1.20.1440.300 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain | 0.53 | 40.0 | 4.19e-01 | 90.8% | 91.4% |
| 4bofA02 | 1.10.3930.10 | Mainly Alpha › Orthogonal Bundle › Pentein › Arginine deiminase | 0.52 | 35.0 | 3.56e-01 | 70.1% | 81.6% |
| 4hehA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.52 | 34.0 | 3.49e-01 | 98.9% | 69.9% |
| 3e7pA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 40.0 | 3.00e-01 | 86.2% | 92.9% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.52 | 42.0 | 4.28e-01 | 94.3% | 94.3% |
| 2plyB01 | 1.10.10.2770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.52 | 38.0 | 3.37e-01 | 80.5% | 88.4% |
| 1sy7A02 | 1.20.1370.20 | Mainly Alpha › Up-down Bundle › Hemocyanin, N-terminal domain › Catalase, four-helical domain | 0.52 | 28.0 | 3.16e-01 | 89.7% | 68.8% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 39.0 | 3.47e-01 | 86.2% | 79.7% |
| 1elkA00 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 40.0 | 3.40e-01 | 87.4% | 72.5% |
| 2lwxA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.51 | 38.0 | 3.79e-01 | 80.5% | 89.8% |
| 2p5tA00 | 1.10.8.130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 35.0 | 3.48e-01 | 71.3% | 80.4% |
| 1txdA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.50 | 40.0 | 3.06e-01 | 90.8% | 82.7% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3927642 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.62 | 46.0 | 3.45e-01 | 78.2% | 51.4% |
| 3984343 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.61 | 47.0 | 3.67e-01 | 85.1% | 38.0% |
| 3482168 | 3252.1.1.1 ↗ | alpha arrays › SHQ1 C-terminal domain-like › SHQ1 C-terminal domain › SHQ1 C-terminal domain › SHQ1 | 0.57 | 49.0 | 3.53e-01 | 98.9% | 51.6% |
| 4295236 | 2004.1.1.516 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, ResIII | 0.54 | 48.0 | 3.37e-01 | 100.0% | 82.7% |
| 3786987 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.52 | 41.0 | 2.78e-01 | 88.5% | 37.9% |
| 4963672 | 102.1.2.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD | 0.52 | 40.0 | 2.97e-01 | 85.1% | 28.5% |
| 3987779 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 41.0 | 4.09e-01 | 86.2% | 88.9% |
| 4634892 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.51 | 45.0 | 4.30e-01 | 98.9% | 91.0% |
| 184827 | 3361.1.1.1 ↗ | alpha bundles › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › C-terminal Pdr1-activating domain of J-protein Zuo1 › RAC_head | 0.51 | 38.0 | 3.79e-01 | 80.5% | 89.8% |
| 3276943 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 45.0 | 2.58e-01 | 100.0% | 9.6% |
| 3376781 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.50 | 43.0 | 3.34e-01 | 100.0% | 67.4% |