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MN096370.1__QDK02835.1__SEA_SQUIDDLY_85__00085
Bact-VirMN096370.1__QDK02835.1__SEA_SQUIDDLY_85__00085
Identity
- Accession:
- MN096370 ↗
- Kingdom:
- phage
Quality
69.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-45
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3q9oA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 58.0 | 3.74e-01 | 100.0% | 47.7% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.65 | 43.0 | 3.19e-01 | 100.0% | 24.6% |
| 4qmaA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 51.0 | 3.63e-01 | 100.0% | 43.4% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 46.0 | 3.63e-01 | 95.2% | 66.7% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 45.0 | 3.53e-01 | 92.9% | 68.3% |
| 3j7aZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.57 | 44.0 | 3.80e-01 | 92.9% | 52.8% |
| 1nbwA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 44.0 | 3.24e-01 | 95.2% | 63.6% |
| 7r5mA01 | 3.30.559.10 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain | 0.56 | 45.0 | 2.96e-01 | 100.0% | 88.8% |
| 1u3oA01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 35.0 | 3.09e-01 | 76.2% | 33.9% |
| 7sxqA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 39.0 | 2.61e-01 | 92.9% | 69.4% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.54 | 40.0 | 3.32e-01 | 92.9% | 40.2% |
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 41.0 | 2.46e-01 | 100.0% | 34.9% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.53 | 45.0 | 3.43e-01 | 100.0% | 56.6% |
| 2jl8102 | 3.30.160.850 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 33.0 | 3.34e-01 | 90.5% | 57.8% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 39.0 | 3.40e-01 | 90.5% | 92.1% |
| 6njyA01 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.04e-01 | 95.2% | 84.6% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.52 | 41.0 | 2.33e-01 | 90.5% | 18.7% |
| 3oc9A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.52 | 40.0 | 2.42e-01 | 100.0% | 61.3% |
| 5jtwA01 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.52 | 40.0 | 3.03e-01 | 100.0% | 52.5% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.51 | 37.0 | 3.50e-01 | 95.2% | 61.7% |
| 3lp8A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 41.0 | 3.01e-01 | 100.0% | 44.2% |
| 1dfaA01 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.51 | 41.0 | 2.74e-01 | 100.0% | 53.0% |
| 3p9xA00 | 3.40.50.170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain | 0.51 | 36.0 | 2.46e-01 | 83.3% | 19.0% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 41.0 | 2.54e-01 | 100.0% | 87.7% |
| 2ff4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 33.0 | 2.68e-01 | 95.2% | 27.3% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.50 | 33.0 | 3.00e-01 | 76.2% | 43.9% |
| 4ekuA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 41.0 | 3.09e-01 | 100.0% | 82.9% |
| 6muwH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 39.0 | 2.67e-01 | 100.0% | 80.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3213645 | 267.1.1.0 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain | 0.62 | 46.0 | 2.92e-01 | 85.7% | 49.2% |
| 3174953 | 69.1.1.2 ↗ | beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint › Hom_end_hint | 0.57 | 43.0 | 2.80e-01 | 88.1% | 38.4% |
| 4498777 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.57 | 40.0 | 2.50e-01 | 81.0% | 40.7% |
| 4833097 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.56 | 38.0 | 2.88e-01 | 73.8% | 51.6% |
| 3577144 | 3957.1.1.0 ↗ | a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 | 0.55 | 37.0 | 3.56e-01 | 83.3% | 60.0% |
| 5055184 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.54 | 40.0 | 3.53e-01 | 100.0% | 50.6% |
| 4942338 | 815.1.1.1 ↗ | a+b two layers › Chromosomal protein MC1 › Chromosomal protein MC1 › Chromosomal protein MC1 › MC1 | 0.54 | 35.0 | 2.80e-01 | 76.2% | 27.0% |
| 5078624 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.54 | 33.0 | 2.56e-01 | 90.5% | 22.9% |
| None | — | 0.54 | 40.0 | 2.79e-01 | 92.9% | 45.8% | |
| 3232476 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 42.0 | 3.26e-01 | 90.5% | 51.0% |
| 3405253 | 74.1.1.0 ↗ | beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain | 0.54 | 40.0 | 3.50e-01 | 92.9% | 50.7% |
| 3273636 | 328.1.1.0 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like | 0.54 | 36.0 | 3.29e-01 | 73.8% | 47.7% |
| 4996027 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.53 | 41.0 | 2.65e-01 | 97.6% | 73.8% |
| 3422000 | 11.1.5.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS | 0.53 | 36.0 | 2.74e-01 | 71.4% | 30.5% |
| None | — | 0.53 | 40.0 | 2.28e-01 | 100.0% | 33.0% | |
| 4951410 | 376.1.3.96 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF2180 | 0.53 | 38.0 | 3.36e-01 | 81.0% | 46.4% |
| 1117759 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.53 | 41.0 | 2.64e-01 | 97.6% | 79.1% |
| 3436318 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.53 | 42.0 | 3.30e-01 | 90.5% | 46.2% |
| 3675745 | 328.1.1.1 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba | 0.52 | 35.0 | 3.02e-01 | 71.4% | 41.1% |
| 4324528 | 284.1.3.1 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 | 0.52 | 40.0 | 3.34e-01 | 85.7% | 74.7% |
| 3896560 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.52 | 41.0 | 2.81e-01 | 92.9% | 22.9% |
| 3778175 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.52 | 38.0 | 2.29e-01 | 92.9% | 52.2% |
| 3983446 | 101.1.2.84 ↗ | alpha arrays › HTH › HTH › winged helix domain › CaiF_GrlA | 0.52 | 34.0 | 2.62e-01 | 100.0% | 21.0% |
| 1888906 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.51 | 39.0 | 2.38e-01 | 100.0% | 73.4% |
| 1503409 | 220.3.1.1 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop | 0.51 | 39.0 | 2.92e-01 | 92.9% | 80.3% |
| 5019455 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 39.0 | 2.64e-01 | 92.9% | 37.4% |