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MN096370.1__QDK02837.1__SEA_SQUIDDLY_87__00087

Bact-Vir

MN096370.1__QDK02837.1__SEA_SQUIDDLY_87__00087

Identity

Accession:
MN096370 ↗
Kingdom:
phage

Quality

69.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-112
PDB
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.70 60.0 4.94e-01 100.0% 59.7%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.70 59.0 4.13e-01 100.0% 42.4%
1wzoA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.67 42.0 4.92e-01 76.6% 100.0%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.62 47.0 4.44e-01 92.2% 67.5%
1hxnA00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.62 47.0 3.32e-01 82.8% 69.0%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.60 52.0 4.36e-01 100.0% 59.6%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 53.0 4.16e-01 100.0% 68.6%
1a3wB03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.60 54.0 4.70e-01 100.0% 92.8%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 51.0 4.32e-01 100.0% 61.3%
5aq0B00 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.59 44.0 4.08e-01 95.3% 62.2%
1aunA00 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.59 41.0 2.89e-01 95.3% 22.6%
3t05A02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.59 52.0 4.53e-01 100.0% 94.8%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.59 52.0 4.55e-01 100.0% 94.8%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.58 49.0 4.45e-01 93.8% 100.0%
4pq0A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.86e-01 81.2% 80.6%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.58 51.0 4.51e-01 100.0% 92.6%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.57 49.0 4.38e-01 95.3% 100.0%
1rm6A05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.56 48.0 3.59e-01 98.4% 76.9%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 44.0 4.25e-01 85.9% 98.6%
2f2hA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 39.0 4.30e-01 98.4% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.56 45.0 4.25e-01 92.2% 74.0%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.56 48.0 4.25e-01 95.3% 100.0%
4me3A03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 39.0 4.16e-01 84.4% 89.1%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 39.0 3.35e-01 84.4% 99.2%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.54 41.0 3.89e-01 85.9% 94.9%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 46.0 4.06e-01 100.0% 90.1%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 46.0 4.53e-01 100.0% 95.8%
7razA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 41.0 3.85e-01 92.2% 68.2%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 44.0 4.15e-01 96.9% 100.0%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.53e-01 81.2% 56.7%
1wgrA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 43.0 4.04e-01 100.0% 95.1%
3kcpA02 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.51 42.0 3.67e-01 93.8% 59.6%
4fl4F02 2.60.40.4130 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.17e-01 93.8% 37.6%
1h0hA04 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.50 41.0 3.17e-01 100.0% 72.7%
4cswA02 3.40.366.30 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › 50S ribosomal protein L16 arginine hydroxylase; Chain A, Domain 2 0.50 41.0 3.15e-01 100.0% 55.7%
3a35A01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 43.0 3.87e-01 100.0% 88.0%
ECOD (86)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3455699 4.1.1.296 beta barrels › SH3 › SH3 › SH3 › TDBD 0.72 59.0 5.47e-01 92.2% 85.5%
3453949 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 57.0 3.71e-01 100.0% 25.9%
3808690 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.66 56.0 3.74e-01 100.0% 33.2%
1758803 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.65 51.0 5.18e-01 98.4% 85.9%
3630385 9.1.1.49 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF7043 0.64 51.0 4.29e-01 89.1% 96.5%
4020418 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.64 43.0 4.66e-01 93.8% 88.0%
1345445 11.1.4.25 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C 0.64 45.0 4.09e-01 93.8% 54.5%
3978012 11.1.4.25 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C 0.64 44.0 3.99e-01 95.3% 52.2%
3684527 221.1.5.3 a+b two layers › beta-Grasp › Ubiquitin-related › Chemotaxis inhibitory protein CHIPS › DUF7734 0.63 54.0 4.87e-01 98.4% 69.9%
3718492 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 47.0 3.15e-01 81.2% 20.8%
3382832 4.1.1.302 beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.62 45.0 3.28e-01 92.2% 27.2%
4935681 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.93e-01 92.2% 96.4%
4203469 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.60 45.0 4.75e-01 81.2% 96.4%
3988738 4111.1.1.1 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy 0.60 51.0 3.53e-01 100.0% 64.3%
3281973 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.60 53.0 4.65e-01 100.0% 94.7%
5041126 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.59 53.0 4.68e-01 100.0% 93.7%
4958779 4111.1.1.1 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AAL_decarboxy 0.59 51.0 3.60e-01 100.0% 71.4%
4337888 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.59 53.0 4.57e-01 100.0% 90.0%
5054526 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.59 53.0 5.21e-01 100.0% 95.7%
3966502 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.59 53.0 4.58e-01 100.0% 93.0%
3213778 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.59 44.0 3.04e-01 81.2% 73.0%
4192745 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.59 52.0 4.62e-01 100.0% 95.8%
4239498 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.59 45.0 4.76e-01 81.2% 100.0%
4272870 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.59 53.0 4.62e-01 100.0% 94.7%
5008884 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.59 52.0 4.79e-01 100.0% 94.1%
None 0.59 48.0 3.01e-01 95.3% 16.8%
4887633 11.1.4.24 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarbopepD_reg_2 0.59 42.0 3.99e-01 93.8% 62.8%
4120366 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.59 44.0 4.65e-01 79.7% 94.5%
4468653 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.59 52.0 4.58e-01 100.0% 94.7%
4954732 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.59 52.0 4.68e-01 100.0% 95.6%
5057245 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.59 52.0 4.66e-01 100.0% 92.2%
3177101 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 52.0 4.49e-01 100.0% 95.0%
4104961 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 53.0 4.69e-01 100.0% 95.6%
3596767 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.58 52.0 4.48e-01 100.0% 94.0%
3626593 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.58 44.0 3.03e-01 81.2% 66.8%
4972564 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 52.0 4.55e-01 100.0% 93.7%
3310664 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 52.0 4.54e-01 100.0% 94.7%
3630405 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.58 43.0 3.01e-01 81.2% 70.0%
1516038 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.58 51.0 4.51e-01 100.0% 92.6%
4994399 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.58 51.0 4.49e-01 100.0% 94.7%
4203356 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.57 51.0 4.50e-01 100.0% 95.8%
3261422 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.57 51.0 4.35e-01 100.0% 90.5%
5027795 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.57 42.0 3.78e-01 93.8% 55.6%
5051090 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 51.0 4.76e-01 100.0% 86.3%
3975132 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 51.0 4.57e-01 100.0% 75.6%
4665407 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.57 42.0 4.53e-01 90.6% 100.0%
4026033 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.57 51.0 4.27e-01 100.0% 96.4%
3386080 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.57 51.0 4.41e-01 100.0% 94.0%
5048696 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 47.0 3.56e-01 95.3% 55.9%
5059088 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 39.0 2.59e-01 73.4% 32.5%
3628972 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.57 42.0 3.01e-01 81.2% 67.6%
4251719 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.57 51.0 4.45e-01 100.0% 94.7%
3503188 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.57 43.0 3.16e-01 84.4% 75.8%
3172227 7558.1.1.0 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase 0.57 50.0 4.41e-01 100.0% 94.7%
3481480 1.1.15.1 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.56 45.0 3.91e-01 96.9% 56.0%
3936161 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.56 42.0 2.99e-01 81.2% 67.9%
3627262 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.56 41.0 2.92e-01 81.2% 66.4%
4619721 12.1.1.14 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C 0.56 48.0 4.27e-01 100.0% 65.3%
3932908 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.56 42.0 2.95e-01 81.2% 69.5%
4930861 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 44.0 4.41e-01 90.6% 92.3%
3194774 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 42.0 2.83e-01 81.2% 74.3%
3993002 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.56 41.0 2.94e-01 81.2% 73.5%
3799048 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 41.0 3.00e-01 81.2% 71.0%
4011447 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.56 44.0 4.08e-01 100.0% 67.1%
3739851 12.1.1.14 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C 0.56 49.0 4.51e-01 100.0% 75.3%
5078547 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 49.0 4.35e-01 100.0% 72.6%
3829837 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.55 49.0 4.09e-01 100.0% 96.4%
1731746 12.1.1.50 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.55 44.0 4.02e-01 100.0% 66.3%
3229069 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.55 41.0 2.94e-01 81.2% 68.1%
3188921 12.1.1.14 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › A_amylase_dom_C 0.55 47.0 4.35e-01 100.0% 74.1%
3642526 11.1.7.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › PEBP-like 0.55 49.0 3.79e-01 100.0% 61.4%
3194678 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 48.0 4.11e-01 100.0% 81.0%
4247667 11.1.1.1053 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M, A2M_BRD, MG4, MG1 0.54 48.0 2.83e-01 98.4% 14.9%
3524786 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 40.0 2.91e-01 81.2% 69.7%
3285086 3268.1.1.0 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase 0.54 41.0 3.93e-01 82.8% 82.7%
4285739 376.1.2.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.54 38.0 3.68e-01 75.0% 98.6%
4631118 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 48.0 2.73e-01 100.0% 11.3%
3518485 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.53 39.0 2.89e-01 81.2% 69.7%
3900771 330.9.1.0 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p 0.53 37.0 3.86e-01 75.0% 85.0%
None 0.53 47.0 2.68e-01 100.0% 11.1%
3474631 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 45.0 3.34e-01 100.0% 61.1%
4950368 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.53 39.0 3.07e-01 82.8% 78.1%
4980192 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 44.0 3.84e-01 93.8% 65.3%
3520998 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.51 38.0 2.88e-01 84.4% 70.4%
3710731 633.23.1.23 alpha bundles › Bromodomain-like › Claudin › Claudin › Amastin 0.51 38.0 2.85e-01 82.8% 96.6%
4034156 1.1.7.5 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Lum_binding 0.50 43.0 3.93e-01 100.0% 90.0%