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MN098326.1__QFG06679.1__CPT_Myduc_057__00056
Bact-VirMN098326.1__QFG06679.1__CPT_Myduc_057__00056
Identity
- Accession:
- MN098326 ↗
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Taxonomy
TaxID: 2650874
Cluster
View cluster (166 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 168-289_325-333
Domain cluster:
rep: KR296690.1__AKJ73996.1__SP36_24__00024__D67-173_211-219
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09950.16 best | Major_capside | 62.8 | 4.80e-17 | 97.7% | 48.4% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ohgA02 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.75 | 56.0 | 6.25e-01 | 96.2% | 97.1% |
| 2pk8A00 | 3.30.2320.10 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › hypothetical protein PF0899 domain | 0.75 | 51.0 | 5.92e-01 | 88.5% | 96.8% |
| 6xgpB01 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.62 | 56.0 | 5.61e-01 | 96.9% | 100.0% |
| 3k13A00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.59 | 43.0 | 3.27e-01 | 74.0% | 56.3% |
| 7cymA01 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.57 | 36.0 | 4.19e-01 | 96.2% | 92.2% |
| 4aweA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 41.0 | 2.99e-01 | 75.6% | 71.4% |
| 1x7oA01 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.55 | 37.0 | 4.09e-01 | 96.2% | 88.9% |
| 3dsaA01 | 3.40.1650.10 | Alpha Beta › 3-Layer(aba) Sandwich › RbsD-like fold › RbsD-like domain | 0.55 | 41.0 | 4.20e-01 | 88.5% | 80.6% |
| 3f4lA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 40.0 | 3.41e-01 | 80.9% | 57.0% |
| 6s2vC02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 37.0 | 3.63e-01 | 98.5% | 66.9% |
| 4h17A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.52 | 38.0 | 3.33e-01 | 75.6% | 70.6% |
| 1bwpA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 43.0 | 3.73e-01 | 91.6% | 78.3% |
| 3gdoA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 39.0 | 3.42e-01 | 80.2% | 59.8% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2995627 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.86 | 83.0 | 6.11e-01 | 100.0% | 53.7% |
| 3944238 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.86 | 82.0 | 6.17e-01 | 100.0% | 56.2% |
| 4815223 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.83 | 79.0 | 6.61e-01 | 100.0% | 73.9% |
| 4884207 | 2485.3.1.7 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside | 0.76 | 72.0 | 5.39e-01 | 100.0% | 52.8% |
| 4889260 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.76 | 63.0 | 4.89e-01 | 93.9% | 43.0% |
| 11367 | 2485.3.1.6 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › ENCP4 | 0.75 | 51.0 | 5.92e-01 | 88.5% | 96.8% |
| 4125320 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.74 | 41.0 | 5.04e-01 | 84.7% | 84.7% |
| 2841509 | 2485.3.1.12 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 | 0.72 | 67.0 | 5.08e-01 | 100.0% | 52.0% |
| 5002389 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.71 | 67.0 | 5.09e-01 | 100.0% | 62.5% |
| 4097188 | 298.4.1.2 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › FliH | 0.70 | 44.0 | 4.73e-01 | 93.1% | 74.5% |
| 4988094 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.67 | 63.0 | 4.97e-01 | 100.0% | 60.8% |
| 3088027 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 61.0 | 4.72e-01 | 100.0% | 56.3% |
| 2989363 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.65 | 60.0 | 4.51e-01 | 100.0% | 60.1% |
| 3583655 | 2485.3.1.5 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Gp23 | 0.64 | 59.0 | 4.40e-01 | 100.0% | 55.9% |
| 2988313 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.64 | 59.0 | 4.59e-01 | 100.0% | 55.1% |
| 3513770 | 2485.3.1.0 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 | 0.64 | 59.0 | 4.45e-01 | 100.0% | 58.7% |
| 3949155 | 2485.3.1.11 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › SrpI-like | 0.64 | 60.0 | 4.63e-01 | 100.0% | 57.4% |
| 4275987 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.63 | 50.0 | 4.95e-01 | 82.4% | 88.9% |
| 5042513 | 298.4.1.1 ↗ | a+b two layers › FwdE/GAPDH domain-like › V-type ATPase subunit E › V-type ATPase subunit E › vATP-synt_E | 0.62 | 38.0 | 3.95e-01 | 87.0% | 65.0% |
| 2639625 | 2485.3.1.18 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid_4 | 0.62 | 57.0 | 4.39e-01 | 100.0% | 55.4% |
| 2989372 | 2485.3.1.3 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid | 0.62 | 57.0 | 4.29e-01 | 100.0% | 57.9% |
| 3288371 | 301.7.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › YjgF-like › YjgF-like › Ribonuc_L-PSP | 0.61 | 46.0 | 4.67e-01 | 87.8% | 80.0% |
| 4263687 | 298.3.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like | 0.60 | 51.0 | 4.91e-01 | 90.8% | 86.7% |
| 5069284 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.59 | 53.0 | 4.04e-01 | 100.0% | 56.5% |
| 3980375 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 51.0 | 3.85e-01 | 100.0% | 90.7% |
| 4261868 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 50.0 | 3.79e-01 | 99.2% | 91.2% |
| 4950024 | 298.1.1.3 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth | 0.54 | 41.0 | 4.47e-01 | 90.1% | 96.4% |
| 3951817 | 298.1.1.3 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Inos-1-P_synth | 0.54 | 41.0 | 4.46e-01 | 91.6% | 97.3% |
| 5063020 | 11.1.1.130 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 | 0.51 | 37.0 | 4.02e-01 | 96.9% | 89.9% |
| 3208845 | 2003.1.5.97 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_32 | 0.51 | 45.0 | 3.24e-01 | 94.7% | 98.3% |