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MN098327.1__QFG06742.1__CPT_Mulock_040__00040
Bact-VirMN098327.1__QFG06742.1__CPT_Mulock_040__00040
Identity
- Accession:
- MN098327 ↗
- Kingdom:
- phage
Quality
80.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-90
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF28165.1 best | GamL | 94.6 | 4.70e-27 | 100.0% | 70.3% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2uuzB00 | 1.10.10.2020 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Host-nuclease inhibitor protein Gam | 0.85 | 78.0 | 7.05e-01 | 100.0% | 82.4% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.73 | 49.0 | 4.07e-01 | 90.6% | 41.3% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.70 | 42.0 | 3.55e-01 | 84.4% | 37.9% |
| 4ysxC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.67 | 60.0 | 4.55e-01 | 100.0% | 41.8% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.64 | 50.0 | 4.61e-01 | 95.3% | 65.9% |
| 2xq0A03 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.63 | 43.0 | 3.16e-01 | 85.9% | 28.7% |
| 3vkgA08 | 1.10.472.130 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Dynein motor, AAA2 domain, small subdomain | 0.62 | 55.0 | 4.13e-01 | 100.0% | 44.4% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.61 | 44.0 | 3.93e-01 | 79.7% | 53.9% |
| 5svlA01 | 1.10.287.940 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel | 0.61 | 52.0 | 5.09e-01 | 92.2% | 91.2% |
| 5jazA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 48.0 | 4.26e-01 | 96.9% | 60.4% |
| 2btoA03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.60 | 40.0 | 4.31e-01 | 84.4% | 83.3% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.59 | 41.0 | 4.19e-01 | 78.1% | 73.4% |
| 3t0yA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 36.0 | 3.76e-01 | 85.9% | 66.7% |
| 6vudA01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.57 | 47.0 | 3.93e-01 | 90.6% | 53.2% |
| 2pv4A00 | 1.10.3440.10 | Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like | 0.56 | 48.0 | 3.82e-01 | 100.0% | 44.1% |
| 2prrA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.56 | 44.0 | 3.52e-01 | 84.4% | 78.7% |
| 6i3mE01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.56 | 46.0 | 3.74e-01 | 98.4% | 84.7% |
| 2pmbA01 | 3.30.1850.10 | Alpha Beta › 2-Layer Sandwich › MCP/YpsA-like › MoCo carrier protein-like | 0.55 | 47.0 | 4.07e-01 | 100.0% | 87.9% |
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.53 | 44.0 | 3.50e-01 | 90.6% | 76.8% |
| 2jpnA00 | 1.20.1280.210 | Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1 | 0.53 | 38.0 | 3.56e-01 | 89.1% | 62.0% |
| 2hcfA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 38.0 | 3.79e-01 | 76.6% | 98.5% |
| 4nqwA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 41.0 | 4.16e-01 | 87.5% | 98.4% |
| 3hugA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 45.0 | 4.20e-01 | 96.9% | 83.7% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 4.18e-01 | 93.8% | 100.0% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3945035 | 6027.1.1.2 ↗ | alpha arrays › Host-nuclease inhibitor protein Gam › Host-nuclease inhibitor protein Gam › Host-nuclease inhibitor protein Gam › PF28165 | 0.98 | 94.0 | 8.16e-01 | 100.0% | 71.1% |
| 4813312 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.75 | 69.0 | 5.08e-01 | 100.0% | 40.8% |
| 3484432 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.72 | 62.0 | 3.93e-01 | 100.0% | 18.8% |
| 3996908 | 5069.1.3.67 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › 7tm_1 | 0.72 | 65.0 | 5.24e-01 | 100.0% | 53.3% |
| 3623437 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.72 | 45.0 | 3.04e-01 | 78.1% | 20.0% |
| 3436965 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.71 | 60.0 | 5.35e-01 | 100.0% | 65.3% |
| 3927398 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.69 | 61.0 | 5.17e-01 | 100.0% | 61.9% |
| 5053609 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.68 | 62.0 | 4.86e-01 | 100.0% | 49.2% |
| 4876177 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.67 | 60.0 | 5.59e-01 | 100.0% | 80.8% |
| 3807233 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.65 | 56.0 | 4.23e-01 | 96.9% | 45.2% |
| 3610793 | 3291.1.1.83 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Cmc1 | 0.65 | 55.0 | 4.70e-01 | 100.0% | 80.0% |
| 3449928 | 5042.1.1.0 ↗ | extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region | 0.64 | 52.0 | 5.06e-01 | 98.4% | 81.4% |
| 3471656 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.63 | 44.0 | 4.11e-01 | 73.4% | 61.3% |
| 3591186 | 7087.1.1.1 ↗ | alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › EBP | 0.63 | 49.0 | 3.60e-01 | 84.4% | 44.2% |
| 4990692 | 7064.1.1.0 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 | 0.62 | 56.0 | 4.16e-01 | 100.0% | 40.6% |
| 3199272 | 138.1.1.17 ↗ | alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › RAD24_helical | 0.61 | 53.0 | 3.91e-01 | 100.0% | 57.1% |
| 3719948 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 42.0 | 4.23e-01 | 78.1% | 73.8% |
| 3546759 | 2004.5.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN,dDENN | 0.58 | 52.0 | 3.44e-01 | 98.4% | 63.6% |
| 3413026 | 103.4.1.3 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Med15_N | 0.58 | 45.0 | 4.38e-01 | 82.8% | 81.4% |
| 3590014 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 48.0 | 4.98e-01 | 93.8% | 100.0% |
| 2755484 | 101.1.2.165 ↗ | alpha arrays › HTH › HTH › winged helix domain › ORC_WH_C | 0.56 | 45.0 | 3.54e-01 | 89.1% | 77.4% |
| 3866248 | 4163.1.1.5 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Use1 | 0.55 | 36.0 | 3.52e-01 | 82.8% | 61.4% |
| 4189329 | 6026.1.1.36 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › AlaE | 0.54 | 46.0 | 3.74e-01 | 100.0% | 99.2% |
| 3972638 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.53 | 44.0 | 4.41e-01 | 93.8% | 100.0% |
| 3971395 | 101.1.1.42 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 | 0.52 | 41.0 | 4.00e-01 | 92.2% | 85.3% |
| 5062153 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.51 | 35.0 | 3.69e-01 | 79.7% | 78.3% |