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MN103533.1__QEA10847.1__X__00079
Bact-VirMN103533.1__QEA10847.1__X__00079
Identity
- Accession:
- MN103533 ↗
- Kingdom:
- phage
Quality
69.1
mean pLDDT
Taxonomy
TaxID: 2601610
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 15-76
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ci0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.68 | 53.0 | 3.70e-01 | 87.1% | 26.0% |
| 1dmhA00 | 2.60.130.10 | Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase | 0.67 | 45.0 | 2.83e-01 | 71.0% | 13.9% |
| 2a2jA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.67 | 52.0 | 3.67e-01 | 87.1% | 26.6% |
| 3nc3B00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.64 | 46.0 | 2.83e-01 | 75.8% | 38.2% |
| 2glzA00 | 3.30.1330.130 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › | 0.62 | 47.0 | 3.51e-01 | 79.0% | 61.1% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 53.0 | 3.82e-01 | 96.8% | 37.2% |
| 5wbwA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.58 | 46.0 | 3.46e-01 | 87.1% | 98.7% |
| 4r42A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.57 | 48.0 | 3.38e-01 | 90.3% | 69.5% |
| 3vm9A02 | 6.10.140.2110 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 48.0 | 4.95e-01 | 95.2% | 100.0% |
| 3lduA01 | 3.30.2130.30 | Alpha Beta › 2-Layer Sandwich › VC0802-like › | 0.56 | 41.0 | 2.96e-01 | 77.4% | 51.1% |
| 6w6jD01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.54 | 44.0 | 3.41e-01 | 87.1% | 100.0% |
| 5vakA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.54 | 47.0 | 2.85e-01 | 100.0% | 40.1% |
| 3fghA00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.54 | 39.0 | 3.92e-01 | 83.9% | 77.6% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.52 | 40.0 | 3.17e-01 | 85.5% | 68.6% |
| 4fd4A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 42.0 | 2.99e-01 | 96.8% | 62.3% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.50 | 42.0 | 3.43e-01 | 90.3% | 56.8% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4996616 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.78 | 56.0 | 5.80e-01 | 93.5% | 81.4% |
| 3509258 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.77 | 54.0 | 3.67e-01 | 72.6% | 23.0% |
| 3803477 | 144.1.1.4 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › DUF8018 | 0.75 | 52.0 | 4.22e-01 | 72.6% | 53.9% |
| 3493601 | 101.1.2.166 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM6_C | 0.74 | 64.0 | 5.25e-01 | 95.2% | 73.6% |
| 3477419 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 60.0 | 4.55e-01 | 88.7% | 53.3% |
| 4304742 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.70 | 53.0 | 3.68e-01 | 85.5% | 25.3% |
| 4567807 | 397.7.1.6 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › PF29718 | 0.69 | 48.0 | 4.73e-01 | 72.6% | 76.9% |
| 3951474 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.67 | 54.0 | 3.68e-01 | 87.1% | 25.2% |
| 4436874 | 397.7.1.1 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › Vicilin_N | 0.66 | 46.0 | 5.25e-01 | 80.6% | 100.0% |
| 4932863 | 101.1.2.947 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27234 | 0.66 | 44.0 | 4.04e-01 | 71.0% | 53.8% |
| 3995059 | 1.1.5.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C | 0.65 | 50.0 | 3.37e-01 | 85.5% | 22.6% |
| 4608212 | 397.7.1.1 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › Vicilin_N | 0.64 | 45.0 | 4.44e-01 | 80.6% | 69.2% |
| 3036753 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.63 | 42.0 | 4.40e-01 | 72.6% | 76.8% |
| 3600611 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.60 | 45.0 | 3.86e-01 | 80.6% | 55.0% |
| 5018308 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 42.0 | 2.87e-01 | 72.6% | 45.5% |
| 2474881 | 397.7.1.0 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 | 0.60 | 42.0 | 4.58e-01 | 98.4% | 100.0% |
| 4617843 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.58 | 46.0 | 3.09e-01 | 87.1% | 39.2% |
| 2870910 | 3640.1.1.0 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain | 0.57 | 44.0 | 3.91e-01 | 82.3% | 57.3% |
| 133755 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.57 | 44.0 | 4.02e-01 | 85.5% | 69.8% |
| 5041309 | 4969.1.1.0 ↗ | alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I | 0.56 | 45.0 | 3.48e-01 | 95.2% | 89.9% |
| 3274724 | 109.4.1.2085 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF29662 | 0.53 | 47.0 | 2.97e-01 | 100.0% | 30.7% |
| 4449496 | 3455.1.1.5 ↗ | alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › PexRD54_WY | 0.53 | 33.0 | 3.04e-01 | 77.4% | 50.0% |
| 5000894 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.53 | 44.0 | 2.76e-01 | 100.0% | 71.6% |
| 3335598 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.51 | 44.0 | 2.77e-01 | 100.0% | 30.6% |
| 3518240 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 42.0 | 2.80e-01 | 100.0% | 37.7% |
| 4952540 | 140.1.1.7 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_2 | 0.50 | 41.0 | 3.26e-01 | 93.5% | 53.4% |
| 4666114 | 2004.1.1.433 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 | 0.50 | 46.0 | 2.79e-01 | 100.0% | 34.5% |