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MN175603.1__QDP43548.1__SEA_TYRUMBRA_10__00010

Bact-Vir

MN175603.1__QDP43548.1__SEA_TYRUMBRA_10__00010

Identity

Accession:
MN175603 ↗
Kingdom:
phage

Quality

94.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Hodgkinviridae› Metamorphoovirus› Microbacterium_phage_Tyrumbra

TaxID: 2596974

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 44-136
PDB
Domain cluster: rep: MW291021.1__QPL14623.1__SEA_EHYELIMAYOE_318__00306__D100-190
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 43.0 5.40e-01 93.5% 100.0%
2oqbA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 61.0 5.84e-01 92.5% 78.7%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.72 60.0 5.40e-01 92.5% 66.7%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 59.0 5.21e-01 92.5% 63.4%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 42.0 5.07e-01 94.6% 100.0%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 57.0 4.99e-01 92.5% 67.2%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 40.0 4.43e-01 97.8% 76.7%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 36.0 4.47e-01 88.2% 90.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 30.0 4.14e-01 97.8% 87.0%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 36.0 4.64e-01 92.5% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 35.0 4.40e-01 90.3% 92.3%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.65 53.0 5.06e-01 89.2% 95.5%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.65 54.0 4.48e-01 90.3% 89.4%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 31.0 4.15e-01 96.8% 91.5%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.63 51.0 4.71e-01 88.2% 90.1%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.62 33.0 4.10e-01 98.9% 90.2%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 38.0 4.33e-01 98.9% 83.8%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 31.0 3.97e-01 97.8% 86.3%
3p02A02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.61 50.0 4.23e-01 90.3% 88.8%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.61 54.0 4.00e-01 96.8% 89.2%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 50.0 4.72e-01 91.4% 79.3%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 53.0 3.94e-01 96.8% 88.5%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.60 52.0 5.18e-01 94.6% 100.0%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.59 51.0 4.54e-01 100.0% 98.6%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 49.0 4.02e-01 100.0% 50.9%
4rsvA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 32.0 3.30e-01 87.1% 57.8%
4dipH00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.57 52.0 4.77e-01 98.9% 89.1%
3m2oA01 3.30.720.120 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 33.0 4.17e-01 71.0% 100.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.57 43.0 3.31e-01 100.0% 34.7%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 36.0 3.89e-01 89.2% 75.9%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 47.0 4.24e-01 95.7% 98.5%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 35.0 4.12e-01 88.2% 100.0%
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 47.0 4.26e-01 100.0% 100.0%
2m0yA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 37.0 4.05e-01 96.8% 89.2%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 34.0 3.88e-01 88.2% 92.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 41.0 4.13e-01 83.9% 94.8%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 32.0 3.85e-01 84.9% 100.0%
1q8mA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.43e-01 87.1% 58.7%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.51 45.0 4.34e-01 100.0% 92.5%
4hsaF02 2.60.40.2150 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 0.51 43.0 4.12e-01 100.0% 80.0%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 41.0 3.71e-01 91.4% 100.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 48.0 4.31e-01 98.9% 46.4%
3786604 220.1.1.244 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF31261 0.76 56.0 5.03e-01 93.5% 57.6%
4404324 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.74 54.0 5.59e-01 84.9% 82.4%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 50.0 5.87e-01 96.8% 100.0%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 44.0 5.48e-01 98.9% 100.0%
4024501 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 61.0 5.88e-01 89.2% 79.0%
3515993 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.72 61.0 5.57e-01 93.5% 70.0%
1833801 220.1.1.25 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CARM1 0.72 61.0 5.84e-01 92.5% 78.7%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 51.0 5.61e-01 100.0% 90.7%
3876027 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.72 61.0 5.19e-01 92.5% 56.7%
3533183 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.72 51.0 4.98e-01 92.5% 68.0%
3845542 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.72 60.0 5.85e-01 89.2% 86.0%
5060760 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 46.0 5.37e-01 100.0% 93.8%
3501905 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 58.0 5.66e-01 95.7% 81.0%
3594856 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 56.0 5.29e-01 92.5% 70.9%
3403399 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.71 60.0 5.61e-01 92.5% 81.7%
3937216 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.71 59.0 5.25e-01 92.5% 63.8%
3491784 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.71 59.0 5.39e-01 92.5% 76.8%
3407758 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.70 52.0 4.82e-01 92.5% 62.6%
167402 220.1.1.13 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.70 55.0 5.03e-01 92.5% 64.5%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.70 45.0 4.20e-01 100.0% 53.0%
3235400 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.69 52.0 5.32e-01 92.5% 83.1%
4396355 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 50.0 5.20e-01 100.0% 83.5%
3480535 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 48.0 4.66e-01 92.5% 66.7%
3934850 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 53.0 4.88e-01 91.4% 65.8%
3652880 220.1.1.172 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PRMT_N 0.67 57.0 5.07e-01 93.5% 81.5%
4034521 220.1.1.87 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.67 50.0 4.93e-01 92.5% 74.0%
3257304 220.1.1.2 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › WH1 0.67 55.0 5.29e-01 92.5% 79.0%
4317035 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 42.0 4.36e-01 100.0% 69.4%
3638300 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.66 55.0 4.82e-01 92.5% 62.9%
3259514 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.77e-01 93.5% 67.5%
3170723 220.1.1.95 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › VID27_PH 0.63 53.0 4.99e-01 92.5% 74.8%
3716204 220.1.1.11 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.63 54.0 5.02e-01 92.5% 75.7%
3732839 220.1.1.71 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Inp1 0.63 53.0 4.93e-01 93.5% 75.0%
1545880 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.63 38.0 4.09e-01 98.9% 70.0%
3199398 331.19.1.3 ↗ a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › CPSF73-100_C 0.63 35.0 3.81e-01 71.0% 63.7%
4668665 331.2.1.8 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C 0.62 38.0 3.91e-01 71.0% 63.3%
4974740 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 4.87e-01 95.7% 73.7%
4960211 220.5.1.1 ↗ beta barrels › PH domain-like › NucS N-terminal domain › NucS N-terminal domain › NucS_N 0.61 50.0 5.03e-01 100.0% 89.5%
3933788 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 39.0 4.57e-01 100.0% 100.0%
5044987 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 38.0 3.66e-01 92.5% 54.3%
1177147 220.1.1.41 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Sharpin_PH 0.61 50.0 4.71e-01 91.4% 78.6%
3813657 220.1.1.172 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PRMT_N 0.61 50.0 4.82e-01 92.5% 80.0%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.77e-01 100.0% 88.2%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 37.0 4.10e-01 87.1% 77.3%
3928987 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.46e-01 100.0% 85.0%
3519861 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 38.0 4.44e-01 96.8% 100.0%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 40.0 4.55e-01 97.8% 98.5%
3926179 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 39.0 4.52e-01 97.8% 100.0%
3576438 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.04e-01 98.9% 73.3%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.57 49.0 4.02e-01 100.0% 50.9%
3843527 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.57 37.0 2.77e-01 88.2% 26.7%
4031670 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.55 32.0 3.85e-01 95.7% 90.0%
3226229 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 34.0 3.96e-01 89.2% 93.8%
4054513 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 45.0 4.29e-01 94.6% 98.2%
3240374 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.52 43.0 2.93e-01 88.2% 96.0%
3267244 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.52 39.0 2.95e-01 80.6% 91.6%
4358722 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.52 36.0 3.46e-01 92.5% 62.9%
3264438 12.3.1.46 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › ComC_SSD 0.52 39.0 2.92e-01 81.7% 89.8%
3490706 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 4.08e-01 87.1% 88.0%
3698363 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 46.0 3.72e-01 100.0% 87.2%
5084101 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 3.71e-01 100.0% 77.8%