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MN175603.1__QDP43626.1__SEA_TYRUMBRA_89__00089
Bact-VirMN175603.1__QDP43626.1__SEA_TYRUMBRA_89__00089
Identity
- Accession:
- MN175603 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Hodgkinviridae›
Metamorphoovirus›
Microbacterium_phage_Tyrumbra
TaxID: 2596974
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-97
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2uxwA01 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 44.0 | 3.48e-01 | 76.1% | 37.1% |
| 2v6kA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.58 | 40.0 | 3.52e-01 | 95.5% | 47.7% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4152656 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.86 | 65.0 | 3.68e-01 | 79.5% | 9.7% |
| 3905499 | 633.7.1.5 ↗ | alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like › Piezo_TM1-24 | 0.83 | 56.0 | 4.96e-01 | 70.5% | 56.0% |
| 3573843 | 3291.1.1.95 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Nas2_N | 0.80 | 57.0 | 4.84e-01 | 73.9% | 64.3% |
| 4025148 | 4163.1.1.0 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like | 0.74 | 61.0 | 5.33e-01 | 90.9% | 62.2% |
| 3529859 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.71 | 64.0 | 4.46e-01 | 100.0% | 66.6% |
| 3405406 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.70 | 52.0 | 3.26e-01 | 77.3% | 59.0% |
| 3317282 | 1065.1.1.1 ↗ | alpha bundles › SPX domain › SPX domain › SPX domain › SPX | 0.70 | 61.0 | 4.47e-01 | 94.3% | 46.2% |
| 3175888 | 6155.1.1.4 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MPC | 0.69 | 46.0 | 4.26e-01 | 98.9% | 54.5% |
| 3370510 | 4146.1.1.8 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › 2TM_P5A-ATPase | 0.67 | 40.0 | 4.66e-01 | 100.0% | 86.7% |
| 3472984 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.66 | 60.0 | 4.74e-01 | 100.0% | 53.7% |
| 3247392 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.63 | 52.0 | 4.33e-01 | 88.6% | 53.3% |
| 4671383 | 4177.1.1.9 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Snx8_BAR_dom | 0.63 | 56.0 | 4.02e-01 | 97.7% | 75.1% |
| 3217798 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.60 | 54.0 | 4.17e-01 | 94.3% | 80.6% |
| 3804624 | 601.1.1.93 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › DUF1216 | 0.52 | 47.0 | 3.79e-01 | 100.0% | 54.5% |