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MN176217.1__QFG06837.1__vBEco4M7_16__00016

Bact-Vir

MN176217.1__QFG06837.1__vBEco4M7_16__00016

Identity

Accession:
MN176217 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Wifcevirus› Escherichia_phage_vB_Eco4M-7

TaxID: 2601674

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-71
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 2.73e-01 77.9% 31.3%
4jdmA02 6.10.250.2680 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 38.0 3.95e-01 79.4% 96.8%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.51 37.0 2.30e-01 76.5% 67.0%
D2 high residues 83-135
PDB
Domain cluster: rep: MT682064.1__QMP82025.1__KpV2811_059__00059__D80-130
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.85e-01 86.8% 90.0%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 46.0 4.75e-01 81.1% 100.0%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.60 48.0 3.93e-01 100.0% 47.1%
2yvsA01 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.57 48.0 3.87e-01 100.0% 86.0%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 45.0 4.23e-01 90.6% 94.1%
1d3bC00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 47.0 4.31e-01 94.3% 95.8%
1npsA00 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.57 41.0 3.67e-01 84.9% 81.8%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 45.0 3.04e-01 92.5% 23.0%
3zbdA00 2.30.30.1000 Mainly Beta › Roll › SH3 type barrels. › Replicase polyprotein 1a 0.56 44.0 3.59e-01 100.0% 44.5%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.56 39.0 3.05e-01 75.5% 38.3%
3b7xA00 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 44.0 3.52e-01 94.3% 88.0%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 46.0 3.38e-01 100.0% 36.1%
2e8yA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 43.0 3.84e-01 100.0% 58.9%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 3.77e-01 100.0% 70.8%
2l6oA01 2.40.10.320 Mainly Beta › Beta Barrel › Thrombin, subunit H › Uncharacterised protein PF13642 yp_926445, N-terminal domain 0.54 41.0 3.83e-01 88.7% 68.1%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.53 46.0 3.62e-01 100.0% 66.7%
5x7qA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 3.44e-01 98.1% 100.0%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 3.36e-01 100.0% 95.5%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 41.0 3.49e-01 100.0% 93.4%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.28e-01 100.0% 84.8%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 36.0 2.76e-01 79.2% 55.9%
1q98A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.50 38.0 2.82e-01 86.8% 63.4%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.60e-01 83.0% 76.6%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.50 42.0 3.43e-01 100.0% 86.5%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.50 39.0 3.02e-01 84.9% 57.5%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.64e-01 96.2% 86.3%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.50 39.0 3.17e-01 92.5% 76.7%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3567640 4187.2.1.0 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.66 52.0 5.35e-01 100.0% 96.0%
3507639 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 53.0 4.85e-01 96.2% 94.3%
3512155 560.1.1.3 ↗ few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › DUF5648 0.59 39.0 3.26e-01 77.4% 37.9%
5067733 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.59 46.0 3.94e-01 88.7% 60.0%
3804093 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.57 40.0 4.27e-01 86.8% 100.0%
5053432 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.57 46.0 4.02e-01 100.0% 97.9%
4003887 10.7.1.0 ↗ beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.55 46.0 3.87e-01 100.0% 62.0%
3992541 10.32.1.205 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Ams1-like_1st 0.55 45.0 3.47e-01 100.0% 43.4%
3969508 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 45.0 3.28e-01 100.0% 38.8%
4619601 10.32.1.48 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_26 0.54 46.0 3.59e-01 100.0% 60.8%
3966483 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 46.0 3.69e-01 100.0% 66.1%
3678413 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.54 43.0 3.05e-01 100.0% 48.6%
3996582 10.32.1.6 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.54 44.0 3.44e-01 100.0% 83.0%
4000175 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 41.0 3.68e-01 90.6% 64.7%
3512272 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 44.0 4.07e-01 100.0% 92.0%
3227155 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 44.0 3.59e-01 100.0% 100.0%
4940606 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 45.0 3.55e-01 100.0% 55.6%
4975808 1.1.7.22 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Peptidase_M42 0.54 43.0 3.81e-01 100.0% 100.0%
3971066 10.32.1.27 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › 7TMR-DISMED2 0.53 42.0 3.27e-01 100.0% 51.3%
4082437 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 43.0 4.26e-01 92.5% 94.5%
3276775 10.32.1.262 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Golvesin_C 0.53 43.0 3.37e-01 100.0% 98.5%
3256943 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.57e-01 92.5% 87.4%
3891360 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.52 42.0 3.52e-01 100.0% 87.3%
3970673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.97e-01 94.3% 81.5%
3391998 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.50e-01 92.5% 84.2%
3224349 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.51 40.0 3.55e-01 100.0% 72.6%
4977038 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 41.0 3.46e-01 96.2% 72.0%
2127246 4.8.1.4 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MBT 0.51 38.0 3.53e-01 83.0% 79.7%
4399012 10.32.1.198 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 0.50 41.0 3.15e-01 100.0% 67.6%
3596623 1.1.2.0 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi 0.50 41.0 3.54e-01 96.2% 97.8%