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MN176228.1__QFR56462.1__049ML003_79__00079
Bact-VirMN176228.1__QFR56462.1__049ML003_79__00079
Identity
- Accession:
- MN176228 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-74
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kp0A03 | 3.30.30.60 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › D-lysine 5,6-aminomutase beta subunit KamE, N-terminal domain | 0.61 | 33.0 | 3.46e-01 | 93.0% | 53.7% |
| 3wxmB02 | 3.30.420.60 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 | 0.59 | 49.0 | 4.11e-01 | 91.5% | 78.7% |
| 6oziB00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.58 | 46.0 | 3.33e-01 | 93.0% | 84.6% |
| 4yfjB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 42.0 | 3.38e-01 | 85.9% | 47.1% |
| 1o7dC02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 34.0 | 3.19e-01 | 100.0% | 49.4% |
| 8a9xA01 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.54 | 38.0 | 3.78e-01 | 85.9% | 70.7% |
| 2v8pA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 39.0 | 3.16e-01 | 81.7% | 86.5% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.51 | 28.0 | 2.46e-01 | 70.4% | 37.4% |
| 4l2iB00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 39.0 | 2.78e-01 | 88.7% | 76.0% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4004191 | 2484.1.1.99 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Peptidase_A17 | 0.57 | 46.0 | 3.40e-01 | 90.1% | 64.0% |
| 3680457 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.56 | 39.0 | 2.81e-01 | 73.2% | 86.8% |
| 2126400 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.56 | 48.0 | 3.17e-01 | 100.0% | 28.1% |
| 3622016 | 2484.5.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › Peptidase_A17 | 0.55 | 44.0 | 3.95e-01 | 90.1% | 81.0% |
| 3401691 | 321.1.1.4 ↗ | a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N | 0.55 | 48.0 | 3.22e-01 | 100.0% | 63.9% |
| 3679339 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.55 | 46.0 | 3.56e-01 | 94.4% | 81.2% |
| 3682250 | 223.1.1.28 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › bHLH-MYC_N | 0.53 | 36.0 | 2.66e-01 | 70.4% | 81.6% |
| 3800723 | 883.1.1.2 ↗ | a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C | 0.52 | 40.0 | 2.74e-01 | 81.7% | 38.7% |
| 4029871 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.52 | 43.0 | 2.67e-01 | 95.8% | 58.5% |
| 4944655 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.52 | 35.0 | 2.93e-01 | 70.4% | 68.1% |
| 3929202 | 2484.5.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 | 0.52 | 38.0 | 3.49e-01 | 81.7% | 90.5% |
| 4954238 | 2484.1.1.29 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ppx-GppA | 0.52 | 41.0 | 3.54e-01 | 91.5% | 82.4% |
| 4508411 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.51 | 26.0 | 2.33e-01 | 85.9% | 32.0% |
| 5038595 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 42.0 | 3.56e-01 | 100.0% | 83.6% |
| 3808565 | 223.1.1.79 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_NLP | 0.51 | 39.0 | 2.82e-01 | 83.1% | 75.7% |