←Back to structures
MN180250.1__QHJ75455.1__X__00019
Bact-VirMN180250.1__QHJ75455.1__X__00019
Identity
- Accession:
- MN180250 ↗
- Kingdom:
- phage
Quality
77.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-46
Domain cluster:
representative
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3f3bA00 | 2.40.10.370 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 | 0.89 | 74.0 | 5.36e-01 | 100.0% | 35.7% |
| 4cp6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.85 | 52.0 | 2.96e-01 | 82.2% | 6.9% |
| 4c57B00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.84 | 58.0 | 3.46e-01 | 77.8% | 10.7% |
| 2kz4A00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.81 | 71.0 | 5.27e-01 | 100.0% | 42.9% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 56.0 | 5.05e-01 | 86.7% | 65.1% |
| 1i8dC02 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.72 | 55.0 | 4.50e-01 | 100.0% | 44.3% |
| 3prbA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.72 | 57.0 | 5.80e-01 | 100.0% | 90.9% |
| 5yycA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.72 | 57.0 | 4.09e-01 | 100.0% | 30.4% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 53.0 | 4.75e-01 | 86.7% | 58.5% |
| 4hh3A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.70 | 59.0 | 4.50e-01 | 100.0% | 81.6% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 54.0 | 4.77e-01 | 88.9% | 60.9% |
| 4aq1A01 | 2.60.40.1220 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.64 | 52.0 | 4.23e-01 | 100.0% | 45.7% |
| 2d9uA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 40.0 | 3.37e-01 | 73.3% | 39.2% |
| 2gk6A02 | 2.40.30.230 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.62 | 51.0 | 4.31e-01 | 100.0% | 59.0% |
| 4lrzE02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.61 | 49.0 | 4.07e-01 | 100.0% | 94.7% |
| 2jdcA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.60 | 42.0 | 3.03e-01 | 100.0% | 23.4% |
| 2mn5A00 | 3.30.30.140 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.60 | 47.0 | 4.54e-01 | 95.6% | 87.5% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 41.0 | 2.93e-01 | 75.6% | 51.4% |
| 1pcfA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 43.0 | 3.92e-01 | 86.7% | 63.6% |
| 3volA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.58 | 49.0 | 3.54e-01 | 100.0% | 71.7% |
| 1f98A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 43.0 | 3.40e-01 | 100.0% | 76.8% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 42.0 | 3.64e-01 | 100.0% | 66.0% |
| 4ad9A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 47.0 | 3.11e-01 | 100.0% | 53.9% |
| 2de6A02 | 2.20.25.680 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 41.0 | 3.89e-01 | 100.0% | 65.5% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 41.0 | 3.57e-01 | 88.9% | 61.3% |
| 2b9kA00 | 2.20.20.70 | Mainly Beta › Single Sheet › Anthopleurin-A › | 0.55 | 40.0 | 4.02e-01 | 100.0% | 85.1% |
| 2zylA01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.55 | 41.0 | 3.01e-01 | 100.0% | 28.1% |
| 6baoA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 42.0 | 3.21e-01 | 100.0% | 65.7% |
| 4kqdB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 42.0 | 3.38e-01 | 100.0% | 78.4% |
| 5tw4A02 | 2.30.140.20 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain | 0.54 | 41.0 | 3.68e-01 | 88.9% | 98.6% |
| 2iw3A05 | 2.40.50.990 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 40.0 | 3.14e-01 | 84.4% | 42.2% |
| 2omlA02 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.54 | 40.0 | 3.41e-01 | 100.0% | 61.9% |
| 3md7A00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.53 | 41.0 | 2.71e-01 | 100.0% | 84.4% |
| 2zf3C00 | 2.50.20.30 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › | 0.53 | 38.0 | 2.64e-01 | 80.0% | 20.9% |
| 4ydzA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 44.0 | 3.24e-01 | 100.0% | 53.3% |
| 4labA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.52 | 38.0 | 2.80e-01 | 100.0% | 26.2% |
| 5c9dB00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.52 | 40.0 | 3.22e-01 | 100.0% | 67.5% |
| 2x9aA00 | 2.30.27.10 | Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain | 0.52 | 42.0 | 3.90e-01 | 100.0% | 70.5% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.51 | 37.0 | 3.50e-01 | 80.0% | 64.9% |
| 4perB00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.51 | 37.0 | 3.06e-01 | 91.1% | 100.0% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 35.0 | 3.15e-01 | 80.0% | 53.9% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954563 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.82 | 71.0 | 5.80e-01 | 100.0% | 57.6% |
| 4395103 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.77 | 66.0 | 5.30e-01 | 100.0% | 48.9% |
| 5042402 | 239.1.1.0 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like | 0.70 | 61.0 | 5.57e-01 | 100.0% | 91.7% |
| 4489855 | 4.6.1.6 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM | 0.68 | 52.0 | 4.46e-01 | 88.9% | 51.9% |
| 3630782 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.68 | 54.0 | 3.82e-01 | 91.1% | 36.6% |
| 3242256 | 223.1.1.11 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA | 0.66 | 54.0 | 3.74e-01 | 100.0% | 67.2% |
| 4988402 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.65 | 49.0 | 4.21e-01 | 86.7% | 48.8% |
| 3795831 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 54.0 | 4.84e-01 | 100.0% | 75.0% |
| 3498807 | 223.1.1.11 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA | 0.64 | 51.0 | 3.82e-01 | 100.0% | 69.6% |
| 3498265 | 223.1.1.11 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › HNOBA | 0.63 | 51.0 | 3.77e-01 | 100.0% | 70.7% |
| 3435224 | 243.3.1.19 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 | 0.61 | 45.0 | 4.03e-01 | 82.2% | 75.4% |
| 4966144 | 3454.1.1.9 ↗ | beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PF26687 | 0.60 | 51.0 | 4.52e-01 | 100.0% | 90.0% |
| 1405153 | 387.1.5.14 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › Defensin_5 | 0.60 | 47.0 | 4.52e-01 | 95.6% | 86.0% |
| 5017794 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 47.0 | 4.00e-01 | 100.0% | 88.9% |
| 3980722 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.58 | 46.0 | 3.55e-01 | 100.0% | 67.7% |
| 3469965 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 43.0 | 3.37e-01 | 100.0% | 72.1% |
| 5046744 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 47.0 | 3.74e-01 | 100.0% | 87.6% |
| 3270574 | 4.8.1.1 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo | 0.56 | 37.0 | 3.50e-01 | 75.6% | 52.7% |
| 2464202 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.56 | 41.0 | 3.57e-01 | 88.9% | 57.8% |
| 4973785 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.55 | 46.0 | 3.53e-01 | 100.0% | 80.0% |
| 3492201 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.55 | 40.0 | 3.66e-01 | 91.1% | 66.7% |
| 3198094 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.55 | 42.0 | 3.63e-01 | 88.9% | 61.3% |
| 3885324 | 11.1.1.260 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG_2 | 0.55 | 45.0 | 3.59e-01 | 100.0% | 45.7% |
| 5079533 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.54 | 44.0 | 2.87e-01 | 93.3% | 70.2% |
| 4630074 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.54 | 41.0 | 4.20e-01 | 91.1% | 91.1% |
| 2724284 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.53 | 43.0 | 3.25e-01 | 100.0% | 68.1% |
| 3939569 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.53 | 44.0 | 3.72e-01 | 100.0% | 84.7% |
| 3716707 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 40.0 | 2.91e-01 | 100.0% | 56.1% |
| 4984757 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.52 | 40.0 | 3.47e-01 | 100.0% | 75.6% |
| 3502375 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.52 | 44.0 | 4.47e-01 | 100.0% | 95.6% |
| 406956 | 392.1.1.1 ↗ | beta meanders › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › N-terminal domains of the minor coat protein g3p › Phage_Coat_A | 0.52 | 44.0 | 3.98e-01 | 100.0% | 69.4% |
| 5046054 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.51 | 42.0 | 3.25e-01 | 100.0% | 76.7% |
| 3585925 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 41.0 | 2.92e-01 | 100.0% | 70.3% |
| 3687618 | 304.9.1.79 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28976 | 0.51 | 41.0 | 2.94e-01 | 100.0% | 31.5% |
| 5078190 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.51 | 43.0 | 2.72e-01 | 100.0% | 20.0% |
| 3760107 | 10.1.1.3 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Calreticulin | 0.51 | 36.0 | 2.28e-01 | 80.0% | 24.9% |
| 3728137 | 2003.1.3.35 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › FMO-like, DAO | 0.51 | 38.0 | 2.21e-01 | 88.9% | 19.6% |
| 5012583 | 11.1.4.106 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PEGA | 0.51 | 41.0 | 2.96e-01 | 97.8% | 32.7% |
| 5055710 | 4985.1.1.0 ↗ | few secondary structure elements › DPY module › DPY module › DPY module | 0.50 | 35.0 | 3.69e-01 | 73.3% | 82.5% |
| 5044346 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 41.0 | 3.21e-01 | 97.8% | 64.5% |