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MN180251.1__QHJ75532.1__X__00069

Bact-Vir

MN180251.1__QHJ75532.1__X__00069

Identity

Accession:
MN180251 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Wolbachia_phage_WO

TaxID: 112596

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-182
PDB
Domain cluster: rep: IMGVR_UViG_3300036548_000037-3300036548-Ga0393240_03915_1_3519__D7-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04434.23 best SWIM 25.2 1.30e-05 22.9% 71.0%
D2 high residues 476-571
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.80 42.0 5.03e-01 99.0% 75.8%
1z5hA03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.67 48.0 5.40e-01 97.9% 100.0%
1iv0A00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.62 38.0 3.83e-01 100.0% 60.2%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 38.0 3.80e-01 99.0% 60.0%
2kt9A01 3.30.390.140 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.59 52.0 5.23e-01 99.0% 98.0%
3mcpA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 39.0 3.76e-01 100.0% 58.9%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 41.0 3.44e-01 100.0% 42.8%
4wz9A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 48.0 5.05e-01 97.9% 100.0%
5mj6A03 2.60.40.1910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 4.77e-01 97.9% 100.0%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 38.0 3.26e-01 100.0% 42.4%
2mqdA00 3.30.1460.60 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.56 31.0 2.92e-01 89.6% 43.7%
3obyA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.56 35.0 3.43e-01 100.0% 56.9%
3d2fA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 37.0 3.81e-01 100.0% 71.0%
1atrA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 36.0 3.80e-01 100.0% 74.2%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.53 31.0 3.04e-01 97.9% 50.0%
1ejfA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 4.32e-01 100.0% 94.5%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 36.0 3.98e-01 99.0% 94.7%
4o5fA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.50 39.0 3.50e-01 100.0% 60.3%
1mgtA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.50 31.0 3.20e-01 95.8% 65.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049293 3116.1.1.0 ↗ a+b two layers › Probable 30S ribosomal protein PSRP-3 › Probable 30S ribosomal protein PSRP-3 › Probable 30S ribosomal protein PSRP-3 0.82 75.0 7.62e-01 99.0% 100.0%
5000498 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.80 41.0 5.07e-01 96.9% 80.0%
4943214 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.79 41.0 4.80e-01 99.0% 70.0%
5048073 896.1.1.1 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.77 40.0 4.76e-01 100.0% 73.8%
3289627 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.76 69.0 6.58e-01 100.0% 96.4%
5052285 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 45.0 4.40e-01 100.0% 62.9%
4157624 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 50.0 5.18e-01 100.0% 83.3%
4325358 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.67 36.0 3.19e-01 100.0% 35.0%
4308615 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.66 40.0 3.60e-01 100.0% 43.7%
4971784 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.66 39.0 4.24e-01 97.9% 70.0%
4484910 2484.1.1.31 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Glucokinase 0.65 43.0 4.09e-01 100.0% 56.5%
5007420 2484.1.1.333 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 0.65 39.0 3.22e-01 100.0% 34.5%
2623870 2484.1.1.44 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pox_A22 0.65 41.0 3.51e-01 100.0% 40.9%
4431514 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.64 38.0 3.33e-01 100.0% 40.0%
4323143 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 49.0 5.01e-01 100.0% 83.2%
5066484 2484.1.1.333 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1464 0.62 38.0 2.99e-01 100.0% 29.0%
3588646 306.8.1.3 ↗ a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › SNF2_assoc 0.62 54.0 5.29e-01 100.0% 86.7%
4314673 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 48.0 4.96e-01 100.0% 88.9%
4244036 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 40.0 3.35e-01 100.0% 40.6%
3223754 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 4.26e-01 100.0% 54.2%
4977038 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 48.0 4.81e-01 100.0% 85.0%
3397739 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 48.0 5.08e-01 100.0% 100.0%
4932409 2484.1.1.75 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e 0.58 39.0 3.48e-01 100.0% 49.6%
4319373 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.57 40.0 3.88e-01 100.0% 63.6%
3404784 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 50.0 5.10e-01 97.9% 97.9%
4033690 2484.1.1.8 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.57 41.0 3.90e-01 100.0% 64.5%
3410382 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 50.0 5.04e-01 100.0% 100.0%
4927554 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.70e-01 100.0% 98.8%
3364258 304.8.1.45 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.55 45.0 4.71e-01 97.9% 100.0%
3308135 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 45.0 4.61e-01 96.9% 96.7%
4379652 2484.1.1.325 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Host_attach 0.54 42.0 3.95e-01 99.0% 67.8%
3452542 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.54 40.0 3.88e-01 100.0% 70.5%
1905698 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.54 40.0 3.66e-01 100.0% 59.7%
3924864 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.54 39.0 3.57e-01 100.0% 56.9%
3845827 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.54 40.0 3.70e-01 100.0% 60.8%
3564955 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.53 40.0 3.80e-01 100.0% 66.1%
3934190 2484.1.1.212 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RT_RNaseH 0.53 39.0 3.60e-01 100.0% 59.2%
3742154 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 36.0 3.52e-01 100.0% 63.8%
3262383 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.53 39.0 3.52e-01 100.0% 55.6%
3937433 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.53 39.0 3.57e-01 100.0% 59.2%
4055808 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.53 39.0 3.55e-01 100.0% 57.7%
3375728 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 40.0 3.56e-01 100.0% 57.9%
3933646 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 41.0 4.11e-01 100.0% 83.0%
4244580 2484.1.1.37 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 42.0 3.82e-01 100.0% 67.2%
3931383 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 38.0 3.43e-01 100.0% 57.7%
3843423 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.51 39.0 3.54e-01 100.0% 60.0%
3930361 2484.5.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH 0.51 37.0 3.44e-01 100.0% 59.2%
4036149 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.51 38.0 3.37e-01 100.0% 53.8%
3937352 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 34.0 3.30e-01 100.0% 60.0%
4530539 2484.5.1.3 ↗ mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 0.50 39.0 2.87e-01 100.0% 32.2%
5061231 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.50 31.0 3.72e-01 96.9% 98.3%
D3 high residues 708-916
PDB
Domain cluster: rep: MK064563__AZI75768.1__SBFV2-gp01__00001__D223-383
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF00176.30 best SNF2-rel_dom 189.0 1.40e-55 97.6% 75.0%
PF00270.36 DEAD 32.8 8.00e-08 75.1% 91.6%
PF04851.22 ResIII 46.8 4.30e-12 74.6% 98.2%
D4 medium residues 183-203_356-377_430-469
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2m3xC02 2.40.10.360 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 32.0 3.48e-01 91.6% 63.8%
1x1fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 30.0 2.54e-01 74.7% 32.2%
5nqdA01 3.30.200.200 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.50 35.0 2.84e-01 73.5% 86.6%
D5 medium residues 204-238_264-291_378-395
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 30.0 3.09e-01 97.5% 59.0%
D6 medium residues 239-263_292-355_396-429
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF26921.1 best DUF8276 39.9 5.80e-10 72.4% 26.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.60 37.0 4.40e-01 93.5% 93.8%
1ni3A03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.57 38.0 4.37e-01 94.3% 92.3%
6pmiF01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 28.0 3.33e-01 98.4% 68.8%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.55 26.0 3.56e-01 70.7% 87.7%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.53 27.0 3.09e-01 72.4% 64.4%
6ldiF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 26.0 2.87e-01 95.1% 58.3%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 27.0 3.21e-01 74.0% 72.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980109 632.24.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › Cyd_oper_YbgE 0.53 32.0 3.85e-01 88.6% 90.4%
D7 medium residues 572-590_608-660
PDB
Domain cluster: rep: IMGVR_UViG_3300036548_000037-3300036548-Ga0393240_03915_1_3519__D583-647
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12419.14 best DUF3670 48.3 1.20e-12 94.4% 37.2%
D8 medium residues 591-607_661-707
PDB
Domain cluster: representative