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MN180251.1__QHJ75545.1__X__00082

Bact-Vir

MN180251.1__QHJ75545.1__X__00082

Identity

Accession:
MN180251 ↗
Kingdom:
phage

Quality

60.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Wolbachia_phage_WO

TaxID: 112596

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-43_180-234
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qsaA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.62 55.0 5.20e-01 98.8% 95.0%
4mn0A00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.59 44.0 3.52e-01 82.1% 50.8%
5cemA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 41.0 3.27e-01 79.8% 82.1%
2gbbB00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.53 46.0 3.85e-01 100.0% 92.3%
2wtvA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 42.0 3.42e-01 90.5% 87.6%
3dlsB02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 41.0 3.32e-01 90.5% 81.9%
D2 medium residues 44-115_131-179
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.65 30.0 3.55e-01 100.0% 62.2%
3c2gA02 1.10.10.1630 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Sys-1 C-terminal domain-like 0.64 27.0 3.51e-01 90.1% 67.6%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.62 34.0 3.82e-01 72.7% 68.5%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.61 39.0 4.54e-01 97.5% 96.3%
1ldjA03 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.59 29.0 3.01e-01 100.0% 47.8%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 36.0 3.86e-01 90.1% 73.8%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.56 32.0 3.49e-01 91.7% 64.7%
1yc9A01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 46.0 3.36e-01 89.3% 99.4%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 26.0 3.45e-01 81.0% 98.1%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.53 37.0 2.56e-01 70.2% 67.1%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.52 34.0 3.73e-01 90.1% 82.3%
4x28C03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.52 43.0 4.06e-01 87.6% 97.2%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 38.0 3.73e-01 75.2% 85.9%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.50 29.0 2.45e-01 90.1% 33.7%
1uddA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.50 46.0 3.77e-01 99.2% 56.7%
2f3oA00 3.20.70.20 Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › 0.50 44.0 2.74e-01 100.0% 96.8%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.50 40.0 4.02e-01 86.8% 91.1%
2rd3D00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.50 41.0 3.43e-01 89.3% 68.3%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3717682 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 47.0 3.91e-01 83.5% 82.5%
5063778 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.57 41.0 2.75e-01 92.6% 19.8%
3370201 101.1.8.17 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › PF26576 0.57 35.0 3.61e-01 90.9% 63.5%
3913986 192.1.1.36 ↗ alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › BAG6 0.56 42.0 4.46e-01 99.2% 91.4%
156884 5085.1.1.1 ↗ a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.55 46.0 3.18e-01 89.3% 99.3%
3962991 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.55 35.0 3.02e-01 98.3% 40.0%
3917600 604.1.1.6 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_4 0.53 36.0 3.64e-01 95.0% 69.2%
3630915 130.1.2.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.53 42.0 3.48e-01 85.1% 60.0%
3250372 130.1.2.1 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › ribosome-binding domain of Mdm38 › LETM1_RBD 0.52 41.0 3.68e-01 82.6% 61.2%
3890439 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.52 37.0 3.75e-01 93.4% 72.0%
3180982 3745.1.1.1 ↗ alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex 0.52 36.0 2.58e-01 71.1% 63.4%
5027312 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.52 37.0 4.04e-01 74.4% 89.3%
4466964 6155.1.1.0 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.52 37.0 3.61e-01 78.5% 66.9%
3939189 174.1.1.0 ↗ few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.51 46.0 4.32e-01 100.0% 81.3%
4973073 3352.1.1.0 ↗ alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.51 45.0 3.18e-01 99.2% 90.7%
4152787 601.14.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.50 40.0 3.53e-01 86.0% 96.1%
D3 medium residues 372-427
PDB
D4 medium residues 445-526
PDB
Domain cluster: representative
D5 medium residues 674-773
PDB