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MN183280.1__QED11246.1__SEA_LOLAVINCA_55__00055
Bact-VirMN183280.1__QED11246.1__SEA_LOLAVINCA_55__00055
Identity
- Accession:
- MN183280 ↗
- Kingdom:
- phage
Quality
61.7
mean pLDDT
Taxonomy
TaxID: 2603262
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 4-57
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ic3A01 | 3.30.2370.10 | Alpha Beta › 2-Layer Sandwich › putative pyruvate dehydrogenase fold › putative pyruvate dehydrogenase | 0.65 | 49.0 | 4.65e-01 | 96.3% | 67.2% |
| 4g3wA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.64 | 48.0 | 3.57e-01 | 81.5% | 100.0% |
| 2dy1A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 45.0 | 2.85e-01 | 75.9% | 41.5% |
| 1kngA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 40.0 | 2.99e-01 | 87.0% | 25.0% |
| 3if2A00 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.61 | 49.0 | 2.93e-01 | 92.6% | 17.4% |
| 2fqmA01 | 6.10.140.830 | Special › Helix non-globular › Helix Hairpins › | 0.61 | 45.0 | 4.86e-01 | 90.7% | 91.3% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 52.0 | 3.73e-01 | 100.0% | 41.1% |
| 3df7A02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 46.0 | 3.47e-01 | 85.2% | 62.0% |
| 1js3A03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 48.0 | 3.96e-01 | 88.9% | 69.1% |
| 4e1oA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 49.0 | 4.00e-01 | 90.7% | 69.4% |
| 3ng7X01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 47.0 | 3.22e-01 | 100.0% | 95.9% |
| 2p1jA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 43.0 | 3.33e-01 | 88.9% | 44.2% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 44.0 | 3.02e-01 | 87.0% | 53.2% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.55 | 41.0 | 3.30e-01 | 96.3% | 38.6% |
| 2xheA03 | 3.90.830.10 | Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a | 0.55 | 49.0 | 3.75e-01 | 100.0% | 81.8% |
| 3n7cA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 39.0 | 3.14e-01 | 77.8% | 74.1% |
| 1k0rA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.53 | 42.0 | 3.70e-01 | 100.0% | 98.0% |
| 3djcB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 40.0 | 3.48e-01 | 94.4% | 53.4% |
| 5gkoA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 2.68e-01 | 90.7% | 54.1% |
| 1eljA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.51 | 44.0 | 3.05e-01 | 98.1% | 66.3% |
| 2gnxA02 | 3.30.450.240 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.50 | 39.0 | 3.13e-01 | 85.2% | 85.3% |
| 1z5yE00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.50 | 38.0 | 2.94e-01 | 87.0% | 82.4% |
| 4ybaA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.50 | 41.0 | 3.70e-01 | 94.4% | 92.2% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5065366 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.71 | 58.0 | 4.53e-01 | 100.0% | 40.8% |
| 3935086 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.68 | 54.0 | 3.88e-01 | 87.0% | 90.3% |
| 3889028 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.66 | 53.0 | 3.67e-01 | 87.0% | 61.8% |
| 3753029 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.64 | 38.0 | 4.27e-01 | 90.7% | 80.0% |
| 3617823 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.63 | 55.0 | 4.62e-01 | 100.0% | 79.6% |
| 3599413 | 3986.1.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › GTP-binding protein lepA C-terminal domain › GTP-binding protein lepA C-terminal domain | 0.62 | 53.0 | 4.09e-01 | 92.6% | 50.4% |
| 4995713 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 48.0 | 3.95e-01 | 83.3% | 72.6% |
| 3710528 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.62 | 42.0 | 3.24e-01 | 100.0% | 27.9% |
| 3955730 | 247.1.1.12 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_3 | 0.61 | 54.0 | 3.27e-01 | 96.3% | 26.2% |
| 3811472 | 2003.1.2.103 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Prenylcys_lyase, NAD_binding_8 | 0.61 | 56.0 | 3.31e-01 | 100.0% | 20.8% |
| 3520192 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.61 | 51.0 | 3.59e-01 | 96.3% | 60.6% |
| 3587620 | 304.55.1.22 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › MobL | 0.58 | 43.0 | 2.84e-01 | 92.6% | 20.5% |
| 4580548 | 109.4.1.211 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19,TPR_20 | 0.57 | 41.0 | 2.76e-01 | 75.9% | 29.3% |
| 3969928 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.56 | 37.0 | 3.99e-01 | 96.3% | 92.5% |
| 3689831 | 221.15.1.0 ↗ | a+b two layers › beta-Grasp › beta-grasp fold domain in leucine-tRNA ligase › beta-grasp fold domain in leucine-tRNA ligase | 0.53 | 43.0 | 3.84e-01 | 92.6% | 66.3% |
| 3357798 | 3082.1.1.3 ↗ | extended segments › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › C-terminal region of nonsense mediated decay factor UPF2 › Pro_isomerase | 0.53 | 35.0 | 3.67e-01 | 75.9% | 86.4% |
| 3944893 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 36.0 | 2.99e-01 | 72.2% | 56.8% |
| 5010744 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 40.0 | 3.82e-01 | 87.0% | 93.8% |
| 3930408 | 2484.5.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH | 0.51 | 43.0 | 3.80e-01 | 94.4% | 68.8% |
| 3237567 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 34.0 | 3.38e-01 | 92.6% | 67.3% |