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MN184885.1__QEQ94700.1__pEpSNUABM09_02__00002

Bact-Vir

MN184885.1__QEQ94700.1__pEpSNUABM09_02__00002

Identity

Accession:
MN184885 ↗
Kingdom:
phage

Quality

78.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-42
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6dv2G02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.89 71.0 4.50e-01 87.5% 19.0%
2x0sA04 1.10.189.10 Mainly Alpha › Orthogonal Bundle › Pyruvate Phosphate di-kinase; domain 2 › Pyruvate Phosphate Dikinase, domain 2 0.86 64.0 5.36e-01 87.5% 49.2%
3h0dB02 1.10.1200.150 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Transcriptional repressor of class III stress genes, C-terminal domain 0.84 68.0 5.28e-01 90.0% 43.2%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.84 73.0 4.95e-01 100.0% 39.6%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.81 73.0 5.66e-01 100.0% 64.3%
2fe1A00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.81 68.0 4.68e-01 92.5% 28.5%
3iylU02 1.10.287.1520 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.80 63.0 5.77e-01 87.5% 67.9%
2cobA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 55.0 5.37e-01 77.5% 65.9%
3gbhB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.80 65.0 4.01e-01 87.5% 16.9%
4zqeA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.80 63.0 4.76e-01 87.5% 36.5%
1vfrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.79 59.0 3.62e-01 80.0% 14.7%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.76 61.0 4.53e-01 92.5% 34.9%
4hiaA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.76 57.0 3.76e-01 85.0% 20.5%
2cr7A01 1.20.1160.11 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix 0.76 62.0 5.53e-01 100.0% 66.7%
7nafR01 1.10.1200.240 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.75 55.0 5.20e-01 90.0% 64.0%
1zmbA02 6.10.170.10 Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › 0.75 56.0 5.81e-01 85.0% 94.4%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.75 60.0 3.79e-01 92.5% 17.2%
1tj7A01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.75 66.0 4.82e-01 100.0% 49.5%
1wpbG01 1.10.287.680 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.72 57.0 5.24e-01 90.0% 70.4%
1zx3A01 1.10.287.1020 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like 0.72 53.0 4.04e-01 80.0% 36.5%
3c24A02 1.10.3640.10 Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal 0.72 55.0 4.18e-01 87.5% 36.0%
1vhxB00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.70 48.0 3.33e-01 90.0% 21.0%
3kd3A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.70 55.0 5.04e-01 100.0% 65.0%
2feaA02 3.90.1470.20 Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › 0.70 56.0 4.36e-01 97.5% 41.8%
3qxzA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.68 55.0 4.95e-01 97.5% 76.7%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.68 55.0 3.31e-01 92.5% 15.6%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.68 50.0 3.25e-01 87.5% 16.4%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 55.0 4.01e-01 95.0% 40.2%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 53.0 4.50e-01 97.5% 59.5%
3zdmB00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.65 56.0 5.27e-01 100.0% 82.0%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 57.0 3.54e-01 100.0% 50.9%
3ly7A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 55.0 3.66e-01 100.0% 23.6%
6t0bc01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 56.0 4.51e-01 100.0% 50.0%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 46.0 4.38e-01 85.0% 62.0%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.65 52.0 3.90e-01 100.0% 36.4%
4ap9A02 1.10.150.210 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 0.64 50.0 4.61e-01 100.0% 66.7%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.74e-01 97.5% 79.2%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.62 49.0 3.13e-01 95.0% 32.2%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.55e-01 97.5% 85.4%
1q15A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.60 45.0 2.86e-01 82.5% 68.3%
4jvyB00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.59 49.0 3.26e-01 100.0% 45.8%
3bm1A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 51.0 3.34e-01 100.0% 64.4%
1ng5B00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.58 44.0 2.95e-01 97.5% 37.4%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.58 46.0 3.48e-01 90.0% 40.2%
2px7A00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 48.0 3.07e-01 97.5% 51.7%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.56 40.0 3.80e-01 77.5% 64.6%
4wr4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 47.0 3.52e-01 100.0% 37.1%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.55 42.0 3.82e-01 100.0% 66.2%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3636494 2003.1.1.36 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N 0.97 78.0 4.72e-01 85.0% 16.6%
4058000 1.1.7.82 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Arg_decarbox_C 0.96 79.0 4.65e-01 87.5% 13.7%
3392541 104.1.1.1 alpha duplicates or obligate multimers › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA_gamma_N 0.93 76.0 6.74e-01 87.5% 67.3%
3460419 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.92 80.0 6.83e-01 92.5% 63.3%
3581366 74.1.1.0 beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.92 78.0 4.29e-01 90.0% 7.7%
4506328 1054.1.1.1 alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C 0.92 79.0 7.28e-01 92.5% 76.0%
3944926 3151.1.1.0 alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 0.91 70.0 7.43e-01 87.5% 94.3%
4124570 1054.1.1.1 alpha bundles › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arginine decarboxylase C-terminal helical extension › Arg_decarbox_C 0.91 78.0 7.51e-01 92.5% 82.2%
3874750 101.1.1.249 alpha arrays › HTH › HTH › Three-helical HTH › SGIII 0.91 79.0 6.06e-01 92.5% 47.5%
4996648 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.89 74.0 4.78e-01 90.0% 22.6%
3987894 181.2.1.1 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain › CtsR_C 0.87 70.0 5.71e-01 87.5% 50.0%
5002758 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.87 67.0 5.77e-01 82.5% 55.0%
3665627 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.86 75.0 4.68e-01 95.0% 55.9%
3327496 3151.1.1.0 alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 0.86 64.0 6.75e-01 95.0% 91.4%
3244407 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.86 72.0 6.32e-01 100.0% 63.3%
3174801 6051.7.1.0 alpha duplicates or obligate multimers › Docking domains in modular polyketide synthases › Class 4 C-terminal docking domain › Class 4 C-terminal docking domain 0.85 60.0 6.48e-01 75.0% 100.0%
3959651 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.85 66.0 4.42e-01 82.5% 25.4%
4203622 310.2.1.1 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › RRF 0.84 69.0 4.44e-01 92.5% 21.7%
5025487 7574.1.1.0 a/b three-layered sandwiches › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) › Thiamin diphosphate-binding fold (THDP-binding) 0.83 68.0 4.54e-01 92.5% 25.3%
3265542 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.82 68.0 6.67e-01 92.5% 88.4%
4345682 223.1.1.97 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_2 0.82 71.0 4.50e-01 100.0% 62.5%
4620052 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.82 67.0 3.85e-01 92.5% 10.4%
3392566 3929.1.1.2 alpha bundles › THO1 C-terminal domain › THO1 C-terminal domain › THO1 C-terminal domain › DUF7084 0.81 60.0 5.66e-01 85.0% 66.7%
3821967 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.81 68.0 5.59e-01 100.0% 52.0%
3477387 103.1.1.122 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DMAP_binding 0.80 65.0 6.53e-01 92.5% 92.5%
3631184 3151.1.1.0 alpha arrays › SPP1 phage GP23.1 › SPP1 phage GP23.1 › SPP1 phage GP23.1 0.80 66.0 6.43e-01 100.0% 84.4%
3818805 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.79 66.0 5.71e-01 100.0% 60.0%
3814902 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.79 67.0 5.46e-01 100.0% 52.0%
3186807 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.78 66.0 5.10e-01 100.0% 44.2%
3400382 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.78 60.0 3.60e-01 87.5% 12.5%
3821280 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.78 67.0 5.60e-01 100.0% 60.0%
3442087 108.1.1.23 alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.78 67.0 5.79e-01 100.0% 64.1%
3588582 304.103.1.1 a+b two layers › Alpha-beta plaits › FMN-dependent nitroreductase-like › FMN-dependent nitroreductase-like › Nitroreductase 0.77 63.0 3.97e-01 87.5% 17.6%
3593162 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.76 58.0 3.36e-01 85.0% 9.7%
3737171 509.1.1.1 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain › PAH 0.75 62.0 5.53e-01 100.0% 65.0%
3509762 311.1.1.2 a+b three layers › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Phoshotransferase/anion transport protein › Band_3_cyto 0.75 56.0 3.89e-01 82.5% 25.2%
3822871 108.1.1.23 alpha arrays › EF-hand › EF-hand-related › EF-hand › RST 0.74 62.0 5.56e-01 100.0% 68.3%
3412555 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 62.0 4.60e-01 100.0% 45.5%
4088535 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.73 57.0 3.81e-01 87.5% 23.6%
3511354 4146.1.1.0 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.73 59.0 5.92e-01 100.0% 92.5%
3539738 10.12.1.1 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding 0.72 61.0 3.86e-01 100.0% 18.2%
3491875 4146.1.1.0 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like 0.72 62.0 5.50e-01 100.0% 68.3%
3226963 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.71 53.0 4.58e-01 82.5% 52.3%
4867290 304.48.1.12 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Mononeg_RNA_pol 0.70 57.0 4.98e-01 100.0% 92.5%
3211845 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.69 50.0 5.08e-01 87.5% 85.0%
3218795 548.1.1.0 alpha duplicates or obligate multimers › GRIP domain › GRIP domain › GRIP domain 0.66 50.0 4.84e-01 92.5% 73.3%
3282520 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.66 53.0 4.61e-01 100.0% 64.3%