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MN204496.1__QEQ93899.1__SEA_KARDASHIAN_34__00034
Bact-VirMN204496.1__QEQ93899.1__SEA_KARDASHIAN_34__00034
Identity
- Accession:
- MN204496 ↗
- Kingdom:
- phage
Quality
87.5
mean pLDDT
Taxonomy
TaxID: 2601691
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-69
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vkzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.66 | 54.0 | 4.34e-01 | 91.2% | 69.4% |
| 1a9xA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.64 | 53.0 | 3.72e-01 | 91.2% | 40.6% |
| 4dimA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.64 | 52.0 | 3.73e-01 | 91.2% | 39.3% |
| 5oomJ01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.64 | 51.0 | 5.24e-01 | 89.7% | 98.5% |
| 2olsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.64 | 51.0 | 4.09e-01 | 89.7% | 93.7% |
| 3cjrB01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.63 | 51.0 | 5.10e-01 | 89.7% | 91.4% |
| 5yzzC00 | 2.40.330.10 | Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain | 0.61 | 50.0 | 4.30e-01 | 92.6% | 92.8% |
| 3wnzA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 52.0 | 4.13e-01 | 98.5% | 58.3% |
| 1w96C04 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.60 | 49.0 | 3.39e-01 | 92.6% | 33.2% |
| 5gi7A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 49.0 | 3.56e-01 | 100.0% | 89.5% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.56 | 44.0 | 4.13e-01 | 91.2% | 69.6% |
| 3d4iB01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 43.0 | 3.04e-01 | 91.2% | 100.0% |
| 1uc8A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 42.0 | 3.91e-01 | 91.2% | 66.0% |
| 2gfoA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 40.0 | 2.62e-01 | 82.4% | 35.1% |
| 1sjiA03 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 40.0 | 3.30e-01 | 80.9% | 92.7% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.52 | 36.0 | 3.89e-01 | 100.0% | 87.5% |
| 4h5iB00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 44.0 | 2.89e-01 | 100.0% | 40.0% |
| 3fgbA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 39.0 | 2.54e-01 | 85.3% | 34.7% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 37.0 | 2.54e-01 | 82.4% | 85.1% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5066490 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.67 | 56.0 | 5.10e-01 | 91.2% | 73.3% |
| 4945800 | 3781.1.1.2 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11 | 0.67 | 55.0 | 5.60e-01 | 89.7% | 100.0% |
| 4948066 | 3781.1.1.2 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11 | 0.66 | 55.0 | 5.45e-01 | 91.2% | 94.3% |
| 3954168 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.64 | 54.0 | 3.77e-01 | 97.1% | 52.9% |
| 3439481 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.64 | 52.0 | 4.99e-01 | 91.2% | 83.5% |
| 2056874 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.63 | 52.0 | 3.89e-01 | 91.2% | 46.9% |
| 3310179 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.62 | 50.0 | 4.49e-01 | 91.2% | 96.0% |
| 3818376 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.62 | 50.0 | 4.25e-01 | 91.2% | 96.5% |
| 4078634 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.61 | 51.0 | 3.59e-01 | 95.6% | 51.0% |
| 3992115 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.61 | 50.0 | 3.76e-01 | 95.6% | 64.9% |
| 3325228 | 1.1.11.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain | 0.61 | 48.0 | 4.37e-01 | 91.2% | 96.9% |
| 3804746 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.59 | 49.0 | 4.17e-01 | 95.6% | 95.8% |
| None | — | 0.59 | 48.0 | 3.48e-01 | 95.6% | 58.5% | |
| 3315718 | 1.1.11.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › PF31239 | 0.59 | 50.0 | 4.51e-01 | 98.5% | 100.0% |
| 4428924 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.57 | 48.0 | 3.34e-01 | 95.6% | 52.5% |
| 3164516 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.57 | 46.0 | 4.30e-01 | 97.1% | 72.9% |
| 2905 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.56 | 44.0 | 4.13e-01 | 91.2% | 69.6% |
| 3479141 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.56 | 46.0 | 3.74e-01 | 97.1% | 73.3% |
| 5041400 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 36.0 | 4.34e-01 | 97.1% | 100.0% |
| 3726371 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.55 | 44.0 | 3.24e-01 | 95.6% | 56.8% |
| 3326268 | 103.1.1.128 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › Sin3a_C | 0.54 | 38.0 | 2.58e-01 | 73.5% | 90.8% |
| 3679704 | 206.1.3.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CPSase_L_D2 | 0.54 | 44.0 | 3.04e-01 | 94.1% | 45.6% |
| 3782147 | 2008.1.1.79 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Pet127 | 0.53 | 46.0 | 2.92e-01 | 100.0% | 73.0% |
| 3374847 | 5.1.3.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth | 0.53 | 44.0 | 2.90e-01 | 97.1% | 84.4% |
| None | — | 0.52 | 44.0 | 2.94e-01 | 100.0% | 67.6% |