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MN204496.1QEQ93912.1SEA_KARDASHIAN_47__00047

Bact-Vir

MN204496.1__QEQ93912.1__SEA_KARDASHIAN_47__00047

Identity

Accession:: MN204496 ↗
Kingdom:: phage

Quality

80.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bingvirus› Streptomyces_phage_Kardashian

TaxID: 2601691

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-125

PDB

Domain cluster: rep: MT006236.1__QIG78163.1__BIHU0010003c01_00044__00044__D2-123

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23803.3 best	Phage_TAC_17	159.0	1.70e-46	100.0%	66.7%

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2jz6A01	2.30.170.40	Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24	0.62	23.0	3.31e-01	89.3%	74.0%
2ob9A00	3.30.2220.20	Alpha Beta › 2-Layer Sandwich › rbstp2171 › Phage tail assembly chaperone gp13-like	0.61	43.0	4.54e-01	100.0%	82.2%
2v3sA00	3.10.20.90	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1	0.58	30.0	3.39e-01	94.3%	62.5%
4lduA03	2.30.30.1040	Mainly Beta › Roll › SH3 type barrels. ›	0.57	30.0	3.76e-01	84.4%	88.2%
4llgM00	3.10.20.510	Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor	0.54	23.0	3.28e-01	91.0%	90.0%
2jxtA01	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	26.0	3.19e-01	95.1%	72.4%
3plsA01	3.30.200.20	Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1	0.53	29.0	3.17e-01	91.8%	61.5%
1hezE00	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	25.0	3.36e-01	91.8%	86.9%
1mrzB02	2.40.30.30	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like	0.52	26.0	2.68e-01	99.2%	46.4%
2esnA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	30.0	3.43e-01	79.5%	78.7%
2bw2A01	3.10.20.420	Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain	0.51	23.0	2.99e-01	92.6%	81.8%
4qqgG00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.51	27.0	3.34e-01	95.1%	84.7%
4ic5A02	2.40.10.10	Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases	0.50	33.0	3.59e-01	87.7%	79.8%

ECOD (14)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4007508	3115.6.1.2 ↗	a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597	0.63	24.0	3.72e-01	91.8%	86.0%
3969006	3115.6.1.2 ↗	a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597	0.63	24.0	3.90e-01	91.8%	95.6%
4004704	3115.6.1.2 ↗	a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597	0.61	24.0	3.79e-01	91.8%	95.6%
3968122	3115.6.1.2 ↗	a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597	0.60	23.0	3.73e-01	91.8%	95.6%
4463006	3115.2.1.0 ↗	a+b two layers › GP2-like › GP2 › GP2	0.57	22.0	3.55e-01	83.6%	95.6%
3266710	284.1.3.0 ↗	a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain	0.56	31.0	3.66e-01	100.0%	81.2%
3300895	375.13.1.3 ↗	few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › ubiquitin	0.55	26.0	3.38e-01	85.2%	89.1%
3216210	3115.1.1.0 ↗	a+b two layers › GP2-like › RplX-like › RplX-like	0.55	25.0	3.57e-01	95.1%	100.0%
3846164	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.54	41.0	3.13e-01	81.1%	73.3%
3056322	1.1.7.7 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6	0.53	31.0	3.29e-01	96.7%	61.8%
3517620	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.52	40.0	3.01e-01	81.1%	71.2%
1888906	2002.1.1.39 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3	0.51	36.0	2.55e-01	71.3%	78.2%
4949578	3957.1.1.0 ↗	a+b two layers › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7 › EKC/KEOPS complex subunit GON7	0.51	25.0	3.26e-01	82.0%	90.0%
3987094	4967.1.1.11 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › GIIM	0.51	31.0	3.16e-01	78.7%	60.0%

D2 medium residues 137-176

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23803.3 best	Phage_TAC_17	38.2	2.10e-09	97.5%	22.0%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2z3xA00	6.10.10.80	Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like	0.67	43.0	3.92e-01	80.0%	46.4%
2c2lA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.63	54.0	3.80e-01	100.0%	33.1%
4bzaA03	3.10.20.310	Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac	0.61	41.0	3.33e-01	82.5%	35.4%
3psfA03	1.10.3500.10	Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like	0.61	52.0	3.11e-01	100.0%	57.1%
5hpfA00	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.60	42.0	2.89e-01	80.0%	95.4%
1s4eG02	3.30.70.890	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain	0.60	49.0	3.42e-01	100.0%	30.1%
3h3aA04	1.10.246.80	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.60	41.0	3.83e-01	82.5%	58.0%
2kz5A00	1.10.880.10	Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain	0.59	48.0	3.83e-01	100.0%	44.0%
4l4xA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.57	48.0	2.72e-01	100.0%	8.0%
1ig3A02	3.40.50.10240	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain	0.53	44.0	3.06e-01	100.0%	34.7%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5058306	4025.1.1.0 ↗	alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit	0.68	51.0	3.18e-01	87.5%	15.1%
3322527	109.27.1.3 ↗	alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3	0.65	54.0	4.14e-01	100.0%	42.0%
4512235	1.1.7.34 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D4	0.63	56.0	3.81e-01	100.0%	87.4%
3893714	244.1.1.0 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C	0.60	49.0	3.45e-01	97.5%	48.7%
4929010	101.1.8.0 ↗	alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes	0.59	49.0	4.28e-01	100.0%	63.1%
3786301	101.1.1.20 ↗	alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A	0.55	46.0	3.56e-01	97.5%	92.6%
2652067	244.4.1.1 ↗	a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Complex1_49kDa	0.53	46.0	4.56e-01	100.0%	95.3%