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MN224564.1__QFG07890.1__SEA_ARACELI_76__00076

Bact-Vir

MN224564.1__QFG07890.1__SEA_ARACELI_76__00076

Identity

Accession:
MN224564 ↗
Kingdom:
phage

Quality

51.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-64
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 64.0 6.21e-01 96.8% 76.8%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.80 70.0 6.51e-01 100.0% 76.6%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 68.0 6.49e-01 91.9% 90.0%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 63.0 6.25e-01 93.5% 83.1%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.78 68.0 6.27e-01 95.2% 94.9%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.77 67.0 6.30e-01 93.5% 98.6%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 64.0 6.27e-01 98.4% 84.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 65.0 6.41e-01 93.5% 100.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 59.0 6.09e-01 91.9% 91.5%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.73 64.0 4.84e-01 100.0% 46.4%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 60.0 6.26e-01 93.5% 98.2%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.72 64.0 5.38e-01 98.4% 76.5%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.71 65.0 5.27e-01 98.4% 60.6%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.71 64.0 4.95e-01 100.0% 96.2%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 62.0 5.91e-01 100.0% 95.9%
3pieB05 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 59.0 5.87e-01 93.5% 96.9%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 60.0 5.47e-01 98.4% 79.5%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 57.0 5.85e-01 90.3% 94.9%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 5.57e-01 96.8% 91.7%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 5.37e-01 90.3% 100.0%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.68 58.0 4.91e-01 96.8% 61.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.14e-01 98.4% 76.7%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.35e-01 87.1% 100.0%
2egeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 56.0 5.29e-01 93.5% 92.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.35e-01 96.8% 89.2%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 5.36e-01 95.2% 90.3%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.65 45.0 4.13e-01 72.6% 100.0%
3obyA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.65 55.0 4.65e-01 98.4% 57.8%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.64 56.0 5.26e-01 100.0% 98.7%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.64 48.0 4.65e-01 96.8% 70.4%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 52.0 5.22e-01 95.2% 100.0%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.29e-01 98.4% 100.0%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 44.0 3.92e-01 91.9% 52.3%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 48.0 4.50e-01 87.1% 88.7%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.62 44.0 3.82e-01 91.9% 50.0%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 54.0 4.63e-01 98.4% 68.0%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.61 48.0 4.04e-01 90.3% 53.6%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.60 48.0 3.51e-01 90.3% 31.9%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.60 45.0 3.49e-01 82.3% 38.7%
6v4xC01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 50.0 4.36e-01 98.4% 69.0%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.58 44.0 3.87e-01 88.7% 83.3%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.57 39.0 3.39e-01 71.0% 52.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 4.23e-01 98.4% 74.7%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.56 43.0 3.27e-01 88.7% 47.7%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.55 39.0 3.85e-01 87.1% 72.7%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.53 42.0 3.64e-01 93.5% 92.7%
2p90A01 3.40.50.10900 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PAC-like subunit 0.53 36.0 2.52e-01 72.6% 56.2%
1u17A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.21e-01 100.0% 79.5%
5k9aA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.51 44.0 3.08e-01 100.0% 35.8%
1uyvA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.50 42.0 2.85e-01 96.8% 85.5%
5tkyA04 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.50 38.0 3.26e-01 88.7% 89.7%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4583465 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.92 71.0 7.85e-01 95.2% 100.0%
4665407 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.90 69.0 7.66e-01 96.8% 100.0%
4252943 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.89 68.0 7.48e-01 95.2% 100.0%
4280256 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.88 68.0 7.48e-01 98.4% 100.0%
4680376 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.88 69.0 7.28e-01 98.4% 92.7%
4053957 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.88 67.0 7.38e-01 96.8% 100.0%
4585317 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.88 69.0 7.27e-01 96.8% 92.7%
4534931 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.87 66.0 6.19e-01 95.2% 66.7%
4385345 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.87 66.0 7.30e-01 95.2% 100.0%
4668201 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.87 65.0 7.15e-01 93.5% 98.0%
5004050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.86 72.0 6.87e-01 100.0% 78.6%
4516378 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.85 69.0 6.60e-01 98.4% 75.7%
3174977 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.85 68.0 5.82e-01 95.2% 55.8%
4058919 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.84 64.0 7.00e-01 95.2% 100.0%
3436022 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.84 64.0 6.73e-01 95.2% 90.9%
3675341 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.84 65.0 6.84e-01 96.8% 92.7%
4432330 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.83 63.0 6.90e-01 95.2% 100.0%
3723175 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.83 75.0 6.57e-01 100.0% 83.3%
3347851 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.83 64.0 6.19e-01 96.8% 74.3%
3596994 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 62.0 6.81e-01 85.5% 100.0%
4974669 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.82 73.0 6.33e-01 100.0% 65.6%
3931055 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.82 74.0 6.96e-01 100.0% 94.7%
5017637 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.82 67.0 7.10e-01 95.2% 98.2%
4938828 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 65.0 6.64e-01 95.2% 90.0%
4957888 4.1.1.458 beta barrels › SH3 › SH3 › SH3 › DUF2098 0.80 69.0 7.01e-01 98.4% 95.0%
3823780 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.79 71.0 6.70e-01 100.0% 88.0%
3806777 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.78 70.0 6.61e-01 100.0% 96.0%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 68.0 6.72e-01 98.4% 90.8%
3333322 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.78 70.0 5.35e-01 98.4% 47.4%
3470175 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.77 70.0 6.35e-01 98.4% 95.0%
4026274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 70.0 5.29e-01 100.0% 96.4%
3886139 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 69.0 6.87e-01 100.0% 98.5%
1175108 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.76 69.0 5.61e-01 100.0% 68.8%
3457106 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.76 68.0 6.74e-01 98.4% 98.5%
4029263 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.75 67.0 5.36e-01 100.0% 66.7%
3974490 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 61.0 5.64e-01 90.3% 98.8%
5048696 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 67.0 4.83e-01 100.0% 59.4%
4293453 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 65.0 5.95e-01 98.4% 80.0%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 66.0 4.11e-01 100.0% 32.9%
3926118 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.73 63.0 6.38e-01 93.5% 100.0%
4163661 4.1.1.446 beta barrels › SH3 › SH3 › SH3 › PF30222 0.73 63.0 6.16e-01 98.4% 98.5%
4250193 4.1.1.78 beta barrels › SH3 › SH3 › SH3 › TTD 0.73 64.0 5.71e-01 100.0% 80.0%
3942573 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 60.0 6.17e-01 88.7% 94.8%
3241663 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.73 62.0 5.08e-01 95.2% 95.7%
4961818 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 60.0 5.63e-01 90.3% 77.3%
4073433 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.73 64.0 5.92e-01 100.0% 91.3%
3328647 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.72 63.0 5.70e-01 98.4% 75.3%
3879747 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 64.0 5.78e-01 100.0% 97.6%
4555816 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 63.0 5.63e-01 98.4% 80.0%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.71 60.0 5.54e-01 95.2% 83.7%
4268386 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 64.0 6.12e-01 100.0% 88.6%
5031673 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 60.0 5.13e-01 98.4% 76.2%
4423306 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.70 62.0 5.81e-01 96.8% 80.0%
4077893 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.70 63.0 3.62e-01 98.4% 11.5%
4519674 4.1.1.186 beta barrels › SH3 › SH3 › SH3 › DUF5397 0.70 59.0 6.04e-01 96.8% 100.0%
5048147 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 5.14e-01 98.4% 94.3%
4547406 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.70 62.0 5.70e-01 98.4% 77.5%
3786412 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.70 59.0 5.50e-01 96.8% 86.3%
5042986 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 59.0 6.05e-01 95.2% 100.0%
5035742 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 6.10e-01 96.8% 100.0%
3959531 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.83e-01 98.4% 88.6%
3272363 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.69 59.0 5.19e-01 98.4% 71.6%
3257650 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 61.0 5.46e-01 96.8% 85.9%
3301015 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.92e-01 98.4% 100.0%
5000741 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 60.0 5.92e-01 98.4% 95.4%
3173156 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.68 57.0 5.34e-01 96.8% 80.0%
4948433 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.67 58.0 5.69e-01 98.4% 94.1%
3231154 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 57.0 5.22e-01 93.5% 82.5%
3704305 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.67 59.0 5.68e-01 100.0% 97.1%
4031151 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.67 52.0 4.96e-01 87.1% 84.0%
3397845 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.93e-01 100.0% 67.6%
4938919 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.42e-01 93.5% 92.3%
3732571 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 5.46e-01 90.3% 98.3%
858452 4.1.1.476 beta barrels › SH3 › SH3 › SH3 › PF30873 0.65 55.0 4.86e-01 98.4% 64.6%
4996021 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 55.0 5.11e-01 100.0% 85.0%
3936053 4.1.1.71 beta barrels › SH3 › SH3 › SH3 › Gemin7 0.62 51.0 4.98e-01 96.8% 97.1%
3448975 4.1.1.66 beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.61 51.0 5.06e-01 96.8% 96.9%
5011460 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 49.0 4.83e-01 98.4% 95.7%
4934755 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 49.0 4.75e-01 95.2% 91.4%
4991129 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 46.0 4.16e-01 98.4% 63.1%
5037228 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.58 47.0 4.73e-01 95.2% 96.9%
3438374 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.56 44.0 2.79e-01 88.7% 27.5%
3679932 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 39.0 3.65e-01 75.8% 81.3%
3896126 4023.1.1.0 a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.51 39.0 3.43e-01 87.1% 87.0%
D2 medium residues 66-146
PDB