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MN224565.1__QFG07921.1__SEA_INTOLERANT_26__00026

Bact-Vir

MN224565.1__QFG07921.1__SEA_INTOLERANT_26__00026

Identity

Accession:
MN224565 ↗
Kingdom:
phage

Quality

85.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-116
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.77 55.0 5.52e-01 89.2% 73.0%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.72 54.0 5.21e-01 89.2% 71.3%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 58.0 5.24e-01 90.1% 78.8%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 5.05e-01 90.1% 77.0%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 57.0 5.09e-01 90.1% 77.6%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 57.0 5.13e-01 90.1% 75.2%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 56.0 5.05e-01 90.1% 77.6%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 56.0 4.68e-01 90.1% 66.7%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 56.0 5.05e-01 90.1% 78.5%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 56.0 4.72e-01 90.1% 68.5%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 55.0 4.70e-01 90.1% 67.0%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 55.0 4.84e-01 90.1% 75.6%
1axiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 41.0 4.31e-01 79.3% 69.3%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.65 40.0 4.73e-01 84.7% 90.7%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.65 28.0 3.71e-01 77.5% 72.9%
2k4qA00 4.10.410.40 Few Secondary Structures › Irregular › Factor Xa Inhibitor › 0.65 53.0 4.76e-01 89.2% 86.5%
1ye9A02 2.40.470.10 Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain 0.62 37.0 3.78e-01 98.2% 58.9%
4ffuB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 34.0 3.12e-01 87.4% 39.3%
5eh1A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 42.0 4.30e-01 91.9% 79.2%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.56e-01 84.7% 99.1%
4w78G00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.57 32.0 2.80e-01 85.6% 35.6%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 30.0 3.55e-01 87.4% 76.4%
1t7vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 34.0 3.72e-01 74.8% 73.3%
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 45.0 4.53e-01 91.9% 85.6%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.55 27.0 3.50e-01 86.5% 89.3%
4geiA00 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 44.0 4.03e-01 86.5% 100.0%
2q7nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.27e-01 82.9% 100.0%
4eq3A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 4.73e-01 97.3% 100.0%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 41.0 4.19e-01 87.4% 82.4%
1m0wA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 42.0 4.25e-01 92.8% 85.2%
1fnfA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.54e-01 83.8% 100.0%
1fyhB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 4.62e-01 97.3% 100.0%
1egjA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.44e-01 87.4% 99.0%
1cd9B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 4.39e-01 85.6% 100.0%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.52 41.0 4.02e-01 85.6% 96.7%
2e3vA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 4.39e-01 88.3% 96.1%
1w15A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.51 43.0 4.08e-01 91.9% 76.5%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 37.0 2.77e-01 95.5% 26.7%
4azsA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 34.0 3.91e-01 88.3% 95.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964308 1.1.13.37 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 0.80 73.0 6.80e-01 97.3% 100.0%
4393593 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.80 65.0 7.03e-01 90.1% 100.0%
4500974 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.78 55.0 5.41e-01 89.2% 67.5%
4602833 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.78 71.0 6.60e-01 98.2% 100.0%
4888819 1.1.13.10 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_1 0.77 67.0 6.78e-01 91.9% 96.4%
77 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.77 55.0 5.54e-01 89.2% 73.6%
3943172 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 62.0 6.48e-01 88.3% 94.0%
1560729 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.74 61.0 5.52e-01 89.2% 66.7%
4344991 1.1.5.35 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › YwpF 0.72 60.0 5.69e-01 89.2% 76.2%
3651800 71.1.1.12 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF620 0.59 31.0 2.84e-01 78.4% 38.6%
5042182 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.58 31.0 3.28e-01 91.9% 57.0%
3606608 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.40e-01 86.5% 81.5%
3818630 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.56 34.0 2.90e-01 94.6% 37.7%
3339476 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.56 33.0 2.85e-01 95.5% 36.1%
3551896 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.55 30.0 3.64e-01 84.7% 84.3%
3290304 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.55 32.0 2.86e-01 90.1% 39.4%
3959230 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.54 33.0 3.10e-01 91.9% 47.1%
3962739 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.52 32.0 2.94e-01 91.9% 44.7%
3961898 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.51 30.0 2.95e-01 90.1% 49.2%
3228758 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 42.0 3.79e-01 100.0% 64.5%
3627039 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 38.0 2.93e-01 100.0% 35.4%
D2 high residues 129-209
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wruA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.79 67.0 6.52e-01 100.0% 84.1%
3d37A02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.79 66.0 6.57e-01 100.0% 87.1%
4jtmA00 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.74 61.0 6.18e-01 100.0% 90.1%
4m0nA02 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.73 58.0 5.95e-01 100.0% 90.9%
1zzvA01 3.55.50.30 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › 0.68 53.0 5.56e-01 100.0% 95.9%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.47e-01 90.1% 55.8%
2k2sB00 2.10.25.10 Mainly Beta › Ribbon › Laminin › Laminin 0.51 27.0 3.10e-01 88.9% 69.1%
4fppA02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 41.0 3.59e-01 95.1% 87.6%
1ejeA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 40.0 3.13e-01 90.1% 51.0%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4846239 3070.1.1.12 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd 0.84 68.0 6.74e-01 100.0% 83.3%
185933 3070.1.1.12 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Gp44-like_2nd 0.79 67.0 6.52e-01 100.0% 84.1%
3948879 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.79 62.0 6.43e-01 100.0% 90.7%
1815424 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.76 60.0 6.18e-01 100.0% 90.7%
4929757 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.71 65.0 5.82e-01 100.0% 86.4%
3974451 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.71 56.0 5.59e-01 100.0% 82.4%
3967020 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.70 55.0 5.45e-01 100.0% 81.2%
3972068 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.69 59.0 5.70e-01 100.0% 84.4%
3967349 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.68 53.0 5.24e-01 100.0% 81.2%
4241517 3070.1.1.6 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › TcpQ 0.67 57.0 5.78e-01 100.0% 96.2%
3974527 3070.1.1.4 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › STN 0.67 52.0 4.97e-01 100.0% 72.6%
1108144 3070.1.1.7 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › FecR_C 0.67 58.0 5.79e-01 100.0% 94.0%
4606766 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.64 56.0 5.48e-01 100.0% 93.3%
4263787 2.1.1.293 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF27162 0.56 38.0 4.11e-01 98.8% 87.7%
4271274 225.1.1.28 a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › PF29744 0.53 47.0 3.81e-01 100.0% 96.9%
3827703 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.52 45.0 3.12e-01 100.0% 41.9%
5027686 2498.1.1.0 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.51 40.0 3.39e-01 90.1% 100.0%
D3 high residues 219-234_319-370
PDB
Domain cluster: representative
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c61A00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.86 53.0 3.16e-01 76.5% 10.0%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.83 75.0 6.68e-01 100.0% 89.5%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 45.0 4.59e-01 100.0% 61.5%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 46.0 4.66e-01 94.1% 60.9%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.75 68.0 5.61e-01 100.0% 65.8%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.75 68.0 5.55e-01 100.0% 65.6%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 60.0 5.38e-01 100.0% 64.5%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.72 49.0 5.23e-01 76.5% 84.2%
1nrkA03 2.40.30.160 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 53.0 4.35e-01 79.4% 66.4%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.70 50.0 5.40e-01 77.9% 89.5%
2v94B00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.70 57.0 5.15e-01 89.7% 74.2%
3fgeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 61.0 4.56e-01 100.0% 70.3%
1ywuA00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.68 58.0 4.76e-01 100.0% 52.0%
2wzpR01 2.30.300.20 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Phage tail base-plate attachment protein, domain D1/D2 0.67 58.0 4.26e-01 100.0% 35.2%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 52.0 4.60e-01 88.2% 59.4%
4ic6C01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 58.0 4.96e-01 100.0% 67.3%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 57.0 5.00e-01 100.0% 80.0%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 54.0 5.14e-01 98.5% 77.1%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.65 51.0 5.27e-01 100.0% 92.2%
4he6A00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.65 59.0 5.37e-01 100.0% 78.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 43.0 4.19e-01 95.6% 63.0%
8a8gA01 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.64 58.0 4.55e-01 100.0% 87.9%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 53.0 4.86e-01 98.5% 69.2%
5xyiY00 3.30.70.3370 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 51.0 4.48e-01 89.7% 64.8%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.63 53.0 5.00e-01 97.1% 97.7%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.63 46.0 4.19e-01 77.9% 58.2%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.63 54.0 5.00e-01 100.0% 95.6%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.47e-01 95.6% 67.5%
1d06A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 46.0 3.75e-01 79.4% 80.8%
1wosA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.62 49.0 4.56e-01 95.6% 68.6%
2jbrA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.62 52.0 4.76e-01 100.0% 89.5%
2v9kA04 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 47.0 4.06e-01 85.3% 81.7%
2ra1A04 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 47.0 4.29e-01 91.2% 61.9%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 45.0 3.95e-01 82.4% 93.5%
2m83A00 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.60 50.0 4.01e-01 94.1% 49.6%
4kbxA01 2.40.37.30 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › 0.59 50.0 3.57e-01 100.0% 78.6%
5b6iA02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.58 47.0 4.12e-01 92.6% 73.8%
1ll8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 42.0 3.58e-01 77.9% 95.6%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 42.0 3.58e-01 79.4% 87.4%
2f8xC03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.74e-01 100.0% 55.3%
2gysA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 4.26e-01 91.2% 75.6%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 47.0 4.08e-01 95.6% 60.9%
1r3eA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.56 42.0 3.06e-01 85.3% 42.5%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.56 46.0 3.85e-01 94.1% 54.3%
3mfxB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 43.0 3.75e-01 88.2% 76.3%
1jssA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 47.0 3.36e-01 95.6% 70.9%
8fd9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 47.0 4.52e-01 95.6% 85.7%
2e9wA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.88e-01 91.2% 64.7%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.98e-01 86.8% 71.3%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.82e-01 91.2% 66.3%
5yzzC00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.54 44.0 3.80e-01 92.6% 63.1%
2d5wA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.53 46.0 3.94e-01 100.0% 85.5%
4b7lA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 44.0 3.95e-01 95.6% 66.0%
4aqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 44.0 4.00e-01 95.6% 77.1%
2k8qA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 43.0 3.55e-01 95.6% 58.2%
2ic2A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.70e-01 91.2% 62.5%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.56e-01 95.6% 59.7%
4g65B02 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.51 43.0 3.96e-01 95.6% 80.4%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.73e-01 91.2% 67.7%
3ndzE00 2.60.40.290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.56e-01 91.2% 76.6%
3bcyA00 3.40.1000.40 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Respiratory growth induced protein 1 0.51 44.0 3.47e-01 98.5% 87.7%
ECOD (80)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.87 80.0 7.40e-01 100.0% 90.6%
4995816 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.85 79.0 6.96e-01 100.0% 90.5%
4647050 1.1.13.56 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.85 78.0 7.36e-01 100.0% 88.7%
3981227 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.82 76.0 7.33e-01 100.0% 92.0%
5002662 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 72.0 6.33e-01 100.0% 79.0%
4166012 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.79 58.0 5.67e-01 100.0% 70.7%
3948975 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.79 72.0 6.98e-01 100.0% 89.3%
5037092 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.77 53.0 5.28e-01 72.1% 90.0%
3243970 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.76 69.0 6.04e-01 100.0% 72.0%
3604610 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.76 60.0 6.19e-01 85.3% 96.9%
3941539 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.74 65.0 5.68e-01 100.0% 96.2%
3389361 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 63.0 5.68e-01 100.0% 68.4%
5079927 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 64.0 5.74e-01 100.0% 71.1%
5037173 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 58.0 5.23e-01 100.0% 63.2%
3588729 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.72 64.0 5.73e-01 100.0% 97.9%
4982501 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 58.0 5.25e-01 97.1% 65.3%
3289340 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 60.0 5.74e-01 100.0% 81.2%
4946578 1.1.7.140 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF87 0.70 62.0 5.11e-01 98.5% 72.5%
5041618 1.1.7.20 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 0.69 56.0 5.07e-01 100.0% 64.9%
4423739 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.69 59.0 5.27e-01 100.0% 67.4%
5002659 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 61.0 5.81e-01 100.0% 97.5%
3253514 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.68 60.0 5.31e-01 100.0% 93.0%
5010302 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 55.0 5.15e-01 100.0% 71.8%
4565837 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.68 49.0 4.35e-01 76.5% 61.1%
184486 1.1.13.26 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.67 59.0 5.60e-01 100.0% 88.9%
5007084 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 58.0 5.03e-01 97.1% 71.4%
4317931 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.67 50.0 4.70e-01 80.9% 75.3%
3268048 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 49.0 5.19e-01 89.7% 88.3%
4988096 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 59.0 5.01e-01 100.0% 93.0%
4285300 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.67 57.0 5.22e-01 100.0% 95.8%
3407711 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.66 61.0 5.29e-01 100.0% 72.0%
5003338 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 57.0 4.99e-01 97.1% 72.4%
4493865 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.66 58.0 5.17e-01 100.0% 94.0%
4405079 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 53.0 4.78e-01 95.6% 63.2%
5007131 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 58.0 5.25e-01 100.0% 71.6%
4939356 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.66 58.0 4.96e-01 100.0% 70.9%
1878249 11.1.1.256 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PulA_N1 0.65 50.0 4.50e-01 89.7% 59.4%
4553723 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.64 53.0 4.82e-01 98.5% 66.3%
4018860 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 55.0 4.58e-01 98.5% 56.0%
3868227 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 51.0 4.64e-01 89.7% 67.4%
4083333 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 52.0 4.71e-01 98.5% 66.3%
5059044 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 52.0 4.68e-01 91.2% 68.4%
1879702 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.63 54.0 4.92e-01 100.0% 92.6%
3267246 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 48.0 4.30e-01 91.2% 58.9%
5045304 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 46.0 3.91e-01 79.4% 84.3%
3488114 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 45.0 3.74e-01 94.1% 44.2%
4172447 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 49.0 4.80e-01 91.2% 80.0%
3801941 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 50.0 4.33e-01 94.1% 74.8%
3505411 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.61 52.0 4.10e-01 94.1% 48.6%
3253616 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.61 53.0 3.94e-01 100.0% 64.3%
3622522 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.60 51.0 4.21e-01 94.1% 53.6%
3234675 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.60 50.0 4.10e-01 94.1% 52.3%
4995368 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.60 47.0 3.79e-01 86.8% 68.9%
3900933 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.60 50.0 4.00e-01 94.1% 49.3%
4983714 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 44.0 3.91e-01 82.4% 91.4%
5040729 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 45.0 3.86e-01 82.4% 74.5%
3919041 11.1.1.54 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.59 49.0 4.12e-01 94.1% 55.3%
3688796 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 46.0 4.27e-01 98.5% 66.7%
None 0.59 49.0 4.03e-01 94.1% 53.1%
3184094 11.1.1.214 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.59 47.0 4.29e-01 91.2% 65.3%
3321067 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 4.02e-01 89.7% 62.2%
5046055 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.58 44.0 3.70e-01 82.4% 89.2%
3258964 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.30e-01 89.7% 68.9%
5082808 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.58 43.0 2.43e-01 82.4% 10.8%
3734856 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.57 50.0 4.06e-01 98.5% 88.5%
1501 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 4.14e-01 91.2% 69.1%
3689674 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 47.0 3.81e-01 92.6% 68.8%
3252787 11.1.1.214 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Pur_ac_phosph_N 0.56 44.0 3.90e-01 91.2% 56.4%
3263591 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 49.0 4.16e-01 100.0% 67.8%
3818862 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 46.0 4.11e-01 92.6% 84.7%
3659859 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.55 50.0 3.46e-01 100.0% 45.5%
3235443 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 44.0 4.08e-01 91.2% 72.2%
3550747 11.1.1.189 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PTCRA 0.55 44.0 3.89e-01 91.2% 65.7%
3277941 223.1.1.36 a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD 0.55 41.0 3.15e-01 80.9% 88.1%
5037939 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.55 50.0 3.74e-01 98.5% 48.4%
3652333 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 45.0 3.97e-01 92.6% 86.4%
4999430 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.54 49.0 3.94e-01 95.6% 60.0%
4858247 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.45e-01 100.0% 46.4%
3509763 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.51 42.0 3.33e-01 95.6% 50.0%
3223396 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 40.0 3.43e-01 100.0% 53.0%
D4 high residues 242-316
PDB
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cddB03 3.30.1920.10 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold 0.88 54.0 6.08e-01 100.0% 79.7%
1wruA03 3.30.1920.10 Alpha Beta › 2-Layer Sandwich › Phage tail proteins - 2 layer sandwich fold › Baseplate protein-like domains - 2 layer sandwich fold 0.84 51.0 5.81e-01 100.0% 82.1%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4049733 3071.1.1.8 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › YQBQ 0.85 60.0 6.43e-01 100.0% 84.6%
5002661 3071.1.1.0 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.84 62.0 6.62e-01 100.0% 89.2%
4957567 3071.1.1.0 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.75 58.0 6.02e-01 100.0% 87.1%
4033373 3071.1.1.0 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins 0.73 54.0 5.77e-01 97.3% 90.8%
4889790 3071.1.1.7 a+b complex topology › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › C-terminal insertion domain in phage tail proteins › PF30637 0.67 54.0 4.21e-01 100.0% 40.4%
D5 high residues 418-582
PDB