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MN224566.1__QFG08041.1__SEA_HERBERTWM_74__00072

Bact-Vir

MN224566.1__QFG08041.1__SEA_HERBERTWM_74__00072

Identity

Accession:
MN224566 ↗
Kingdom:
phage

Quality

96.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-56
PDB
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ku9B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 4.25e-01 70.9% 64.4%
1d8cA03 1.20.1220.12 Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III 0.71 50.0 3.79e-01 74.5% 31.1%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.70 52.0 4.41e-01 78.2% 82.8%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.69 49.0 4.12e-01 76.4% 72.3%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.67 54.0 4.30e-01 92.7% 90.7%
3pjvD01 3.30.110.200 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.63 45.0 4.01e-01 76.4% 75.6%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.62 48.0 2.81e-01 83.6% 92.9%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.61 52.0 4.40e-01 96.4% 94.7%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.61 51.0 3.94e-01 92.7% 55.7%
2gx9A00 3.30.420.330 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Influenza virus non-structural protein, effector domain 0.60 43.0 3.33e-01 76.4% 47.6%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.64e-01 81.8% 67.9%
1fjeB01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.59 47.0 4.23e-01 90.9% 91.4%
2hg4D03 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.59 47.0 3.00e-01 90.9% 70.5%
7qh2C03 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 44.0 3.98e-01 83.6% 97.4%
5tkwA01 3.30.420.380 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.58 46.0 3.29e-01 87.3% 52.4%
3dmgA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 43.0 3.03e-01 80.0% 38.4%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 41.0 2.78e-01 76.4% 32.1%
1nv8A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 46.0 3.20e-01 90.9% 27.4%
1xb4B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 39.0 3.61e-01 72.7% 98.7%
3ewgA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.57 44.0 3.97e-01 87.3% 83.7%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 47.0 4.36e-01 94.5% 94.4%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 43.0 3.69e-01 96.4% 50.5%
2zw3A00 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.56 49.0 3.37e-01 100.0% 85.6%
2ef7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 46.0 3.55e-01 94.5% 86.5%
1wg4A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 44.0 4.07e-01 96.4% 97.4%
3i8nB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.55 47.0 3.62e-01 96.4% 88.9%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 3.31e-01 80.0% 57.3%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.55 36.0 3.01e-01 70.9% 58.6%
2ouxA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 45.0 3.50e-01 96.4% 85.3%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 45.0 3.46e-01 96.4% 85.3%
2yzqA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 45.0 3.79e-01 96.4% 83.8%
3lv9A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 45.0 3.44e-01 94.5% 84.6%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 3.59e-01 100.0% 45.0%
3kpbA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 45.0 3.52e-01 94.5% 89.9%
5mrwB01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 39.0 3.10e-01 83.6% 35.1%
2p9mB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 44.0 3.40e-01 94.5% 85.3%
3im8A02 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.53 42.0 3.91e-01 92.7% 89.0%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.53 46.0 3.48e-01 96.4% 89.8%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 39.0 3.75e-01 85.5% 95.6%
4umwA04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.52 42.0 3.52e-01 100.0% 100.0%
3lhhA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 41.0 3.36e-01 87.3% 100.0%
3ocoA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 44.0 3.31e-01 94.5% 81.6%
4dqwA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 43.0 3.47e-01 94.5% 94.7%
3l2bA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.52 43.0 3.47e-01 96.4% 93.2%
2g47A03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 42.0 2.93e-01 100.0% 74.0%
2w00A02 3.90.640.50 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › 0.52 41.0 3.88e-01 98.2% 86.3%
1x4gA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 41.0 3.48e-01 98.2% 68.8%
3jcmH04 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.51 39.0 3.62e-01 90.9% 93.5%
3kh5A02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 44.0 3.32e-01 96.4% 89.7%
2uv4A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 43.0 3.22e-01 96.4% 83.9%
2nycA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.51 43.0 3.31e-01 96.4% 84.6%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 44.0 3.59e-01 100.0% 54.4%
4dzrA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 40.0 2.94e-01 90.9% 31.3%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3228509 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.74 52.0 3.87e-01 74.5% 61.5%
4026995 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.67 58.0 4.72e-01 100.0% 80.0%
3452406 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.65 53.0 4.36e-01 96.4% 85.5%
4017553 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.64 43.0 3.64e-01 70.9% 70.5%
3252704 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.63 52.0 4.27e-01 98.2% 89.1%
3782381 101.1.2.407 alpha arrays › HTH › HTH › winged helix domain › WHD_ORC2 0.62 48.0 3.80e-01 87.3% 83.2%
4968297 304.4.1.2 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MIase 0.62 52.0 4.58e-01 96.4% 94.1%
3788879 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.61 45.0 2.65e-01 78.2% 14.5%
3706910 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.60 47.0 3.41e-01 96.4% 84.5%
3402258 304.8.1.49 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › R1_ABCA1 0.60 52.0 4.34e-01 100.0% 93.0%
4316395 2003.1.5.46 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.60 43.0 2.81e-01 80.0% 24.1%
3598488 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 46.0 3.57e-01 100.0% 89.2%
4624017 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.58 45.0 3.14e-01 83.6% 41.1%
3739949 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.58 43.0 3.82e-01 83.6% 84.7%
4926825 304.4.1.2 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › MIase 0.58 46.0 3.83e-01 89.1% 74.3%
4821040 304.6.1.1 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › FAD-oxidase_C 0.58 45.0 3.05e-01 89.1% 35.2%
3598643 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 40.0 3.68e-01 72.7% 100.0%
4021490 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.57 45.0 4.14e-01 92.7% 92.5%
3609469 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.73e-01 85.5% 76.8%
3980760 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 41.0 2.92e-01 76.4% 27.9%
4014246 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 47.0 2.98e-01 92.7% 58.3%
3211790 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.56 43.0 3.98e-01 87.3% 98.7%
4128792 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.56 47.0 4.26e-01 100.0% 90.0%
4443601 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.56 45.0 4.05e-01 94.5% 97.6%
3742418 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.55 45.0 4.08e-01 100.0% 91.8%
154263 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.55 39.0 3.31e-01 80.0% 57.3%
7290 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 46.0 3.50e-01 94.5% 87.9%
3249715 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.54 41.0 3.26e-01 85.5% 64.8%
7289 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 38.0 2.97e-01 80.0% 40.4%
3432076 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 48.0 3.81e-01 100.0% 52.7%
3487071 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 44.0 3.58e-01 100.0% 93.3%
5061477 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 46.0 3.31e-01 96.4% 70.3%
3381288 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.53 42.0 3.72e-01 92.7% 92.9%
4980761 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 43.0 3.29e-01 94.5% 74.3%
3285016 304.4.1.3 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII 0.53 42.0 3.73e-01 96.4% 95.6%
3943749 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 40.0 2.64e-01 85.5% 55.7%
4993554 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 2.85e-01 76.4% 52.9%
4945488 282.1.1.9 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › IMPDH 0.53 45.0 3.64e-01 98.2% 97.3%
5057336 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.53 45.0 3.43e-01 96.4% 83.7%
3287011 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.52 41.0 3.93e-01 94.5% 92.9%
4964820 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.52 44.0 3.45e-01 96.4% 92.5%
4523274 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.52 40.0 2.90e-01 92.7% 39.5%
5062261 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.52 37.0 3.08e-01 83.6% 42.0%
4933496 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.52 42.0 3.97e-01 92.7% 100.0%
4948844 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.52 44.0 3.50e-01 100.0% 96.7%
4961023 267.1.1.0 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.52 38.0 3.45e-01 85.5% 100.0%
5027698 282.1.1.1 a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.51 43.0 3.44e-01 96.4% 92.2%
4978477 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.51 34.0 2.60e-01 70.9% 43.0%
5064968 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 40.0 3.10e-01 89.1% 70.0%