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MN228696.1__QEP29799.1__Smphiort11_001__00001

Bact-Vir

MN228696.1__QEP29799.1__Smphiort11_001__00001

Identity

Accession:
MN228696 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 50.0 4.22e-01 76.1% 78.1%
4fdtB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.67 51.0 3.14e-01 80.3% 92.9%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.67 47.0 4.27e-01 73.2% 62.8%
5ksdA04 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.67 51.0 4.04e-01 83.1% 87.2%
2p18A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.66 50.0 3.30e-01 80.3% 50.2%
1yrtA02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.66 39.0 3.06e-01 100.0% 29.2%
3flpA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.66 51.0 3.59e-01 83.1% 41.9%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.66 50.0 3.66e-01 81.7% 72.9%
2g1lA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.64 48.0 4.23e-01 78.9% 70.9%
4mjgA00 3.30.2030.30 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.64 45.0 3.39e-01 74.6% 36.2%
6psyA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.63 49.0 3.46e-01 84.5% 93.8%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 46.0 3.75e-01 77.5% 88.3%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.63 44.0 3.21e-01 73.2% 40.6%
3mx7A00 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.63 45.0 4.13e-01 74.6% 91.1%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.62 46.0 4.33e-01 80.3% 92.0%
7fisA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 48.0 3.20e-01 84.5% 38.3%
3qv0A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.61 46.0 3.45e-01 81.7% 52.5%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.60 46.0 4.06e-01 83.1% 58.3%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.59 47.0 3.07e-01 85.9% 29.3%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 43.0 3.24e-01 77.5% 44.6%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 48.0 3.99e-01 91.5% 83.5%
3r1kA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.59 34.0 3.12e-01 76.1% 40.6%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.59 40.0 3.39e-01 71.8% 95.2%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.58 45.0 3.37e-01 84.5% 89.6%
1av5A00 3.30.428.10 Alpha Beta › 2-Layer Sandwich › HIT family, subunit A › HIT-like 0.58 40.0 3.51e-01 73.2% 92.0%
1jv2B04 4.10.1240.30 Few Secondary Structures › Irregular › Hormone receptor fold › 0.58 39.0 3.66e-01 100.0% 57.0%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.58 43.0 4.08e-01 78.9% 91.8%
4rbnA01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 47.0 3.91e-01 90.1% 81.4%
2x5gA00 3.30.720.60 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 38.0 3.52e-01 81.7% 52.7%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 44.0 2.89e-01 84.5% 20.9%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 37.0 3.90e-01 73.2% 71.2%
3f1sA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 42.0 3.34e-01 78.9% 86.7%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 38.0 4.04e-01 71.8% 98.4%
2a4vA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 48.0 3.78e-01 95.8% 98.6%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.55 40.0 3.51e-01 77.5% 79.6%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 4.25e-01 84.5% 93.3%
3s2kB01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 43.0 2.90e-01 88.7% 63.6%
2aq5A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 41.0 2.67e-01 84.5% 26.4%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 36.0 3.07e-01 70.4% 92.9%
2wxwA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 39.0 3.08e-01 83.1% 80.4%
1zx5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 2.65e-01 74.6% 85.7%
1vhzA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.50 40.0 2.96e-01 85.9% 78.1%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3271434 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.77 55.0 4.71e-01 74.6% 59.1%
4243044 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.72 55.0 4.08e-01 80.3% 57.1%
3219318 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.68 50.0 3.28e-01 77.5% 20.7%
1141888 331.10.2.2 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › SpmSyn_N 0.68 47.0 4.27e-01 73.2% 64.6%
5018724 872.3.1.0 a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like 0.67 46.0 4.22e-01 71.8% 92.6%
3519803 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.67 49.0 3.59e-01 77.5% 73.7%
4386896 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.67 48.0 3.17e-01 76.1% 92.4%
3213553 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.66 47.0 3.17e-01 76.1% 44.2%
3296838 4099.1.1.14 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Knl1_RWD_C 0.66 48.0 4.46e-01 80.3% 84.2%
3965197 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.66 48.0 3.49e-01 77.5% 34.9%
3280935 300.1.1.12 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › DUF5753 0.65 48.0 3.57e-01 80.3% 86.0%
5031724 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.65 47.0 4.36e-01 76.1% 72.2%
3415741 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 48.0 3.83e-01 78.9% 39.3%
3265309 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.65 53.0 4.20e-01 88.7% 66.0%
3220436 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.65 48.0 3.68e-01 78.9% 53.6%
3227424 331.18.1.8 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › BBS7_pf 0.65 45.0 3.98e-01 73.2% 57.1%
4173609 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 46.0 3.09e-01 76.1% 92.4%
3669346 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.64 45.0 4.37e-01 73.2% 73.4%
3667806 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.64 46.0 3.21e-01 76.1% 94.0%
5059043 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 47.0 3.01e-01 77.5% 33.9%
3799398 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.64 47.0 3.64e-01 78.9% 53.9%
3912770 5.1.7.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.64 50.0 2.93e-01 83.1% 17.7%
3612203 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.63 48.0 3.46e-01 83.1% 91.8%
4971247 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.63 44.0 4.24e-01 71.8% 72.5%
3403936 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.63 44.0 3.91e-01 73.2% 56.2%
4887836 5.1.7.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › BNR_6, Sortilin-Vps10 0.63 48.0 2.95e-01 83.1% 21.2%
3934170 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.63 46.0 4.22e-01 78.9% 65.3%
3815957 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.63 44.0 2.85e-01 73.2% 17.8%
5036626 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.62 48.0 2.99e-01 83.1% 21.2%
5002402 3153.1.1.0 a+b two layers › PipX › PipX › PipX 0.62 47.0 4.70e-01 81.7% 84.0%
3286007 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.62 54.0 3.75e-01 100.0% 43.1%
4929578 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.62 45.0 3.85e-01 78.9% 62.5%
5059099 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.62 44.0 4.14e-01 76.1% 71.6%
4024671 4041.1.1.0 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.62 45.0 3.40e-01 78.9% 75.6%
3718648 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 51.0 4.49e-01 93.0% 88.0%
3239128 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 47.0 3.06e-01 84.5% 28.2%
3618450 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 43.0 3.91e-01 76.1% 98.0%
6650 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.61 47.0 3.78e-01 83.1% 47.5%
3280624 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.61 53.0 3.64e-01 98.6% 42.7%
3388541 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.60 44.0 4.08e-01 78.9% 68.4%
3917054 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.60 44.0 3.69e-01 78.9% 53.6%
3275111 5.1.4.304 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.60 47.0 3.01e-01 84.5% 25.3%
3400053 206.1.1.98 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1, APH 0.60 46.0 3.26e-01 84.5% 97.8%
3656728 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.59 43.0 4.56e-01 78.9% 100.0%
3888634 5.1.4.450 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ldl_recept_b 0.59 43.0 3.35e-01 77.5% 53.5%
5072132 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.59 41.0 3.97e-01 73.2% 73.8%
1169854 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.58 40.0 3.63e-01 71.8% 54.5%
3408937 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 40.0 3.86e-01 70.4% 78.8%
5078315 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 45.0 2.66e-01 84.5% 15.0%
4027075 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.58 41.0 3.79e-01 74.6% 60.0%
3931696 241.4.1.1 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.58 43.0 3.80e-01 78.9% 61.9%
4937428 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.57 45.0 3.57e-01 84.5% 42.1%
2442052 5.1.3.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.57 44.0 3.52e-01 83.1% 51.7%
4015863 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 42.0 2.73e-01 80.3% 26.2%
None 0.57 41.0 2.73e-01 77.5% 27.0%
3622645 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 38.0 3.51e-01 71.8% 56.8%
3515770 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.56 47.0 3.11e-01 93.0% 27.1%
4962147 2003.1.1.391 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › GFO_IDH_MocA_C3 0.54 44.0 2.84e-01 90.1% 89.9%
4017127 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 40.0 2.74e-01 81.7% 26.8%
3222321 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.54 40.0 2.75e-01 78.9% 22.0%
4029890 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.53 43.0 2.85e-01 90.1% 96.6%
3436240 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.53 42.0 2.77e-01 87.3% 29.6%
3278853 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 36.0 3.74e-01 70.4% 81.5%
3357858 241.4.1.0 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.52 39.0 3.42e-01 80.3% 62.7%
5051418 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 46.0 3.72e-01 100.0% 84.4%