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MN228696.1__QEP29807.1__Smphiort11_009__00009

Bact-Vir

MN228696.1__QEP29807.1__Smphiort11_009__00009

Identity

Accession:
MN228696 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Huelvavirus› Sinorhizobium_phage_ort11

TaxID: 2599764

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kwpA00 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.90 59.0 4.36e-01 100.0% 29.5%
1qo0D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 48.0 5.19e-01 94.6% 76.1%
1wivA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 40.0 3.72e-01 87.5% 42.5%
1wjuA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 44.0 3.70e-01 91.1% 40.0%
3i3lA02 3.30.390.160 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.65 46.0 3.58e-01 75.0% 84.0%
1u9pA00 1.10.1220.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant › Met repressor-like 0.65 55.0 4.70e-01 98.2% 92.7%
2dzmA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.65 40.0 3.75e-01 96.4% 48.6%
1wx8A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 40.0 3.45e-01 98.2% 37.5%
3gg7A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 53.0 3.41e-01 92.9% 100.0%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 48.0 4.05e-01 89.3% 84.6%
2pptA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.61 32.0 3.76e-01 89.3% 73.0%
1ur3M00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.60 46.0 2.96e-01 85.7% 79.8%
4uy8X00 2.30.170.40 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 0.59 40.0 3.73e-01 94.6% 53.2%
2k89A00 3.10.20.870 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain 0.59 38.0 3.47e-01 91.1% 46.3%
5hn3A00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.57 51.0 3.15e-01 100.0% 93.4%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.56 37.0 3.59e-01 89.3% 58.5%
2l76A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 36.0 3.09e-01 98.2% 37.9%
2kaaA00 3.10.450.30 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases 0.56 43.0 3.46e-01 92.9% 56.9%
2xgvA00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.54 43.0 3.34e-01 89.3% 84.2%
2y8yA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.54 42.0 3.32e-01 83.9% 73.9%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.54 47.0 2.90e-01 100.0% 97.9%
4rayA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.53 41.0 4.35e-01 94.6% 96.0%
3khyA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 43.0 3.04e-01 92.9% 65.1%
3euoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 36.0 2.75e-01 75.0% 84.1%
3oymA01 1.10.340.70 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.52 37.0 3.16e-01 76.8% 63.4%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 39.0 3.21e-01 91.1% 83.3%
2h84A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.51 40.0 3.03e-01 87.5% 83.8%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 38.0 2.90e-01 89.3% 46.6%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5045741 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.75 59.0 5.65e-01 94.6% 73.8%
4023138 323.1.1.5 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Condensation 0.73 53.0 3.37e-01 76.8% 16.4%
4058428 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.73 45.0 4.57e-01 83.9% 63.6%
4375217 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.72 47.0 4.18e-01 91.1% 47.5%
5011906 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.69 46.0 4.68e-01 92.9% 70.9%
3709652 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.66 41.0 3.89e-01 96.4% 50.0%
2625223 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.65 46.0 4.71e-01 94.6% 78.2%
2771700 101.1.11.11 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › DUF1778 0.64 46.0 4.06e-01 94.6% 50.6%
3606623 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.64 40.0 3.74e-01 96.4% 50.0%
3586991 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.64 43.0 4.00e-01 73.2% 53.3%
5051574 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 46.0 4.58e-01 96.4% 75.0%
4991835 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 44.0 4.63e-01 96.4% 88.0%
3631499 3965.1.1.0 ↗ alpha arrays › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain › Origin recognition complex subunit 3 helical insert domain 0.61 52.0 3.52e-01 98.2% 33.5%
5047393 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 4.38e-01 96.4% 78.2%
3891073 5051.1.1.1 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.60 52.0 2.94e-01 100.0% 69.5%
1167933 101.1.11.5 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix › Arc 0.59 48.0 4.71e-01 91.1% 83.3%
4959999 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 4.23e-01 96.4% 86.7%
3901808 5051.1.1.1 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › SNF 0.58 49.0 2.82e-01 100.0% 71.9%
3594086 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.57 41.0 2.63e-01 75.0% 42.7%
5051204 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 42.0 4.12e-01 94.6% 75.0%
3398588 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 34.0 3.06e-01 94.6% 40.0%
3938541 3075.1.1.0 ↗ a+b two layers › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA › ubiquitin-binding domain from PLAA 0.54 35.0 3.53e-01 96.4% 61.7%
3495542 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.54 42.0 2.71e-01 89.3% 85.8%
3703262 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.53 45.0 3.77e-01 100.0% 74.3%
3499344 3914.1.1.2 ↗ alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.53 42.0 2.41e-01 98.2% 18.1%
4008317 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 40.0 3.17e-01 91.1% 66.9%
4927429 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 32.0 3.56e-01 96.4% 85.0%
3463111 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 39.0 3.84e-01 80.4% 88.3%
3939667 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.51 45.0 2.84e-01 100.0% 31.8%
3240369 5001.1.1.66 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg 0.51 41.0 2.74e-01 98.2% 35.1%
3981437 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 44.0 3.19e-01 96.4% 75.6%
4593386 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.50 40.0 2.58e-01 94.6% 80.0%
3926138 101.1.1.76 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 0.50 35.0 3.06e-01 75.0% 70.0%