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MN228696.1__QEP29810.1__Smphiort11_012__00012

Bact-Vir

MN228696.1__QEP29810.1__Smphiort11_012__00012

Identity

Accession:
MN228696 ↗
Kingdom:
phage

Quality

73.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4nsmA00 6.10.250.2770 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 52.0 5.16e-01 100.0% 64.8%
7jpxA02 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.71 65.0 5.26e-01 100.0% 82.6%
2gtaA00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.70 52.0 4.65e-01 100.0% 55.7%
3op0A01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.66 53.0 4.23e-01 100.0% 43.4%
2kseA00 1.20.5.1040 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. 0.66 59.0 5.63e-01 98.5% 96.1%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.65 59.0 4.95e-01 100.0% 60.4%
3ungC03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.64 49.0 3.90e-01 82.1% 47.4%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 57.0 4.80e-01 100.0% 68.8%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.62 42.0 3.55e-01 71.6% 66.9%
4p3fA00 1.10.3450.40 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › Signal recognition particle, SRP68 subunit, RNA-binding domain 0.62 54.0 3.91e-01 98.5% 34.2%
1onfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 45.0 3.20e-01 91.0% 25.5%
8iprA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.62 54.0 3.50e-01 100.0% 21.5%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 53.0 4.39e-01 100.0% 92.1%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.61 45.0 4.08e-01 82.1% 56.8%
6nifA01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.60 45.0 3.20e-01 80.6% 32.4%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 3.91e-01 92.5% 78.2%
1w07A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 53.0 3.96e-01 100.0% 45.8%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.59 50.0 4.14e-01 98.5% 98.4%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.59 49.0 3.85e-01 100.0% 56.7%
1l7vA00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.58 50.0 3.27e-01 100.0% 81.1%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.58 48.0 3.84e-01 89.6% 63.0%
3kdqA00 6.10.320.10 Special › Helix non-globular › Ferritin › 0.58 49.0 3.88e-01 100.0% 57.9%
4bujE03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.57 43.0 3.12e-01 85.1% 57.8%
2felA00 1.20.200.10 Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) 0.57 48.0 3.14e-01 100.0% 23.1%
2pmeA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 47.0 3.14e-01 100.0% 94.6%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.56 47.0 3.46e-01 98.5% 53.1%
3ehgA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.56 46.0 3.88e-01 97.0% 73.6%
3l60A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 44.0 3.15e-01 89.6% 80.5%
2jhjA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.55 38.0 3.27e-01 74.6% 45.0%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.53 46.0 3.27e-01 98.5% 49.0%
2hqmA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 46.0 3.20e-01 98.5% 47.8%
4r5zA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 36.0 2.94e-01 73.1% 38.9%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 42.0 3.86e-01 89.6% 98.9%
3f0zA02 1.10.340.30 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Hypothetical protein; domain 2 0.52 37.0 3.11e-01 76.1% 43.8%
6oyfA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.51 40.0 3.15e-01 89.6% 68.8%
3ic9A02 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.51 44.0 4.39e-01 94.0% 97.1%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4270827 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.74 65.0 4.64e-01 94.0% 100.0%
4442629 3563.1.1.1 alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.73 51.0 3.34e-01 73.1% 31.1%
3373525 5073.1.1.4 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M › Cation_ATPase_C,Cation_ATPase_N 0.72 60.0 3.60e-01 92.5% 17.4%
3254127 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.70 54.0 3.96e-01 100.0% 31.1%
4032397 3843.1.1.1 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › Oxidored_q2 0.69 61.0 5.11e-01 98.5% 65.8%
4965147 5001.1.1.292 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HisKA_7TM 0.68 53.0 3.69e-01 100.0% 24.7%
4978597 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.68 62.0 4.43e-01 100.0% 38.9%
3699229 6110.1.1.1 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › DHC_N2 0.68 51.0 3.09e-01 100.0% 11.5%
3197864 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.68 60.0 5.30e-01 100.0% 88.0%
3744587 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.67 61.0 5.05e-01 100.0% 58.3%
4069414 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.67 55.0 4.06e-01 91.0% 100.0%
4215095 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.66 59.0 3.74e-01 100.0% 45.3%
4981980 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.66 59.0 4.95e-01 100.0% 66.1%
5026028 3393.1.1.3 extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › DUF3311 0.66 56.0 5.67e-01 100.0% 96.9%
3624104 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 53.0 5.16e-01 86.6% 82.2%
5028061 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.65 59.0 5.34e-01 100.0% 96.7%
5036014 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.65 59.0 5.24e-01 100.0% 76.8%
3971928 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.65 52.0 5.06e-01 100.0% 80.0%
4050917 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.64 47.0 3.92e-01 77.6% 47.0%
3806737 5057.1.1.0 alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore 0.64 55.0 4.29e-01 100.0% 45.7%
3726808 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.64 58.0 4.17e-01 100.0% 37.8%
4628544 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.63 49.0 4.09e-01 83.6% 50.4%
3789506 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.62 54.0 4.43e-01 100.0% 63.8%
3920013 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.62 53.0 3.89e-01 97.0% 74.7%
3649913 5050.1.1.58 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.62 55.0 4.10e-01 100.0% 82.9%
3553628 109.4.1.120 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2 0.62 55.0 3.45e-01 100.0% 23.5%
4031068 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.61 55.0 5.07e-01 100.0% 90.6%
3009971 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 53.0 4.92e-01 100.0% 95.5%
3248833 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.61 52.0 3.90e-01 97.0% 78.3%
4439546 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.61 53.0 3.81e-01 100.0% 33.0%
4457710 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.61 54.0 4.49e-01 100.0% 97.5%
4025349 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.60 51.0 4.22e-01 100.0% 66.2%
3675872 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.60 51.0 4.21e-01 100.0% 52.8%
3729874 4163.1.1.1 alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 0.59 54.0 3.98e-01 100.0% 39.4%
4504660 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.59 45.0 3.84e-01 83.6% 53.0%
3267322 2004.5.1.1 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › DENN,dDENN 0.59 41.0 2.86e-01 74.6% 19.7%
3426522 3562.1.1.11 alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › PGG 0.59 50.0 4.06e-01 100.0% 48.1%
5062471 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 53.0 4.50e-01 100.0% 69.1%
4029283 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 3.56e-01 95.5% 32.6%
3575903 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.59 49.0 3.58e-01 94.0% 33.2%
3444472 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.58 42.0 4.32e-01 77.6% 92.3%
3971712 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.58 48.0 4.02e-01 97.0% 86.2%
3471623 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.58 47.0 3.20e-01 88.1% 28.7%
5013274 5011.1.1.0 extended segments › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa › Bacterial ba3 type cytochrome c oxidase subunit IIa 0.58 49.0 4.60e-01 98.5% 96.5%
3656255 3291.1.1.51 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PGG 0.58 51.0 4.38e-01 100.0% 62.7%
3819208 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.58 50.0 3.01e-01 98.5% 63.3%
5016606 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 3.77e-01 91.0% 44.3%
3176105 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.57 49.0 3.29e-01 100.0% 23.1%
5081618 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.57 48.0 4.11e-01 100.0% 58.3%
4296145 306.7.1.1 a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N 0.57 43.0 3.67e-01 80.6% 50.9%
None 0.57 49.0 3.53e-01 100.0% 33.5%
3628456 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.57 49.0 4.04e-01 100.0% 77.3%
3333315 633.6.1.8 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 0.57 50.0 3.47e-01 100.0% 30.7%
3513803 377.1.1.92 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LUC7 0.56 47.0 4.41e-01 91.0% 88.7%
3911302 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 38.0 3.90e-01 71.6% 78.5%
4978280 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.55 45.0 4.23e-01 92.5% 81.0%
3166881 906.1.1.3 few secondary structure elements › CCCH zinc finger › CCCH zinc finger › CCCH zinc finger › LUC7 0.55 47.0 3.74e-01 97.0% 50.0%
4033471 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.55 41.0 3.73e-01 85.1% 57.9%
338175 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.55 46.0 3.26e-01 91.0% 31.8%
4620044 188.1.1.1 alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.55 45.0 3.15e-01 98.5% 75.4%
5042930 3563.1.1.1 alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC 0.54 45.0 3.20e-01 100.0% 43.1%
3723257 5042.1.1.0 extended segments › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region › Magnesium transport protein CorA, transmembrane region 0.54 46.0 4.33e-01 98.5% 97.6%
3698506 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.53 42.0 3.01e-01 89.6% 44.7%
3674534 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.53 47.0 3.31e-01 97.0% 89.0%
4598960 304.36.1.0 a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like 0.52 38.0 3.78e-01 77.6% 75.7%
3638065 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.52 42.0 3.47e-01 94.0% 81.5%
3540048 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.52 46.0 3.16e-01 97.0% 89.3%
3789599 859.1.1.0 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.52 45.0 3.27e-01 100.0% 53.8%
4028432 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.51 46.0 3.23e-01 98.5% 91.0%
3592447 859.1.1.0 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.51 46.0 3.24e-01 98.5% 91.3%