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MN228696.1__QEP29811.1__Smphiort11_013__00013

Bact-Vir

MN228696.1__QEP29811.1__Smphiort11_013__00013

Identity

Accession:
MN228696 ↗
Kingdom:
phage

Quality

81.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Schitoviridae› Huelvavirus› Sinorhizobium_phage_ort11

TaxID: 2599764

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-108
PDB
Domain cluster: representative
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.70 41.0 5.17e-01 86.7% 98.1%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 41.0 5.07e-01 81.1% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.66 42.0 4.52e-01 84.4% 75.3%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 40.0 4.07e-01 85.6% 63.2%
4p5nA00 2.30.30.1060 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 5.38e-01 87.8% 98.6%
8eq1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 34.0 3.46e-01 82.2% 54.5%
6su1D01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 34.0 3.47e-01 82.2% 54.4%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.61 33.0 3.35e-01 82.2% 52.2%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 41.0 4.08e-01 85.6% 69.2%
1yvuA02 2.30.340.10 Mainly Beta › Roll › PAZ domain fold › PAZ domain superfamily 0.58 45.0 4.52e-01 82.2% 92.5%
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.56 33.0 3.18e-01 82.2% 47.2%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 33.0 3.99e-01 77.8% 96.3%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 42.0 4.09e-01 96.7% 73.0%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 42.0 4.61e-01 82.2% 98.6%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.55 43.0 4.57e-01 83.3% 96.2%
2jn4A00 2.40.50.240 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like 0.55 35.0 4.04e-01 78.9% 89.4%
4g6iB01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 34.0 3.49e-01 84.4% 65.2%
2bm0A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 40.0 3.87e-01 100.0% 72.8%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.89e-01 82.2% 82.8%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 31.0 3.60e-01 80.0% 94.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.76 45.0 5.72e-01 83.3% 98.2%
4668201 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.75 42.0 5.42e-01 82.2% 100.0%
4385345 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 41.0 5.34e-01 84.4% 100.0%
4977469 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.74 47.0 5.26e-01 84.4% 82.9%
4429179 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.73 37.0 5.06e-01 80.0% 100.0%
4280256 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.73 40.0 5.16e-01 86.7% 98.0%
4058919 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 41.0 5.19e-01 84.4% 100.0%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 41.0 5.19e-01 84.4% 94.5%
4336500 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 42.0 5.29e-01 86.7% 96.4%
4084190 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.72 41.0 4.94e-01 83.3% 86.4%
4116754 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.72 37.0 4.89e-01 78.9% 100.0%
4321173 4.1.1.98 ↗ beta barrels › SH3 › SH3 › SH3 › ProQ_C 0.71 42.0 5.12e-01 84.4% 91.4%
5035934 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.71 44.0 5.09e-01 82.2% 86.2%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.70 39.0 4.29e-01 85.6% 66.7%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 43.0 4.81e-01 86.7% 81.4%
3347851 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 39.0 4.36e-01 83.3% 72.9%
3598284 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 39.0 4.68e-01 84.4% 90.9%
3583597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 4.45e-01 86.7% 66.7%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.67 46.0 4.63e-01 90.0% 70.0%
3941729 4.1.1.157 ↗ beta barrels › SH3 › SH3 › SH3 › YdfZ 0.67 42.0 5.04e-01 85.6% 96.7%
3433070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 40.0 4.48e-01 86.7% 79.7%
3315100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 41.0 4.76e-01 92.2% 92.3%
5058285 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.61 43.0 4.37e-01 92.2% 73.3%
4311355 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.60 35.0 3.45e-01 84.4% 52.0%
4025294 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.57 45.0 4.58e-01 85.6% 84.4%
3360171 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.57 46.0 3.97e-01 86.7% 57.2%
3593976 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.00e-01 85.6% 60.0%
4026033 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.56 35.0 3.34e-01 84.4% 50.9%
3592077 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 45.0 3.80e-01 85.6% 93.8%
4666983 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 40.0 3.40e-01 98.9% 46.7%
3620431 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 43.0 4.08e-01 98.9% 70.0%
3499855 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 4.47e-01 86.7% 97.3%
4243239 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.54 45.0 3.97e-01 100.0% 62.3%
4084726 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 43.0 4.08e-01 100.0% 74.3%
4653293 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 45.0 4.18e-01 100.0% 74.5%
3579597 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.53 43.0 4.06e-01 100.0% 72.7%
3935042 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.53 40.0 3.81e-01 82.2% 68.2%
3624304 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 43.0 4.26e-01 87.8% 94.7%
3815479 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 31.0 3.37e-01 84.4% 69.3%
322883 4.6.1.1 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.51 45.0 3.32e-01 95.6% 48.9%
3719677 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 42.0 3.48e-01 98.9% 51.6%