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MN228696.1__QEP29843.1__Smphiort11_045__00045
Bact-VirMN228696.1__QEP29843.1__Smphiort11_045__00045
Identity
- Accession:
- MN228696 ↗
- Kingdom:
- phage
Quality
96.3
mean pLDDT
Taxonomy
TaxID: 2599764
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-50
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g6vB00 | 3.30.70.2920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.83 | 73.0 | 5.73e-01 | 100.0% | 95.1% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.80 | 70.0 | 4.79e-01 | 100.0% | 92.8% |
| 6s2wA01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.79 | 70.0 | 5.89e-01 | 100.0% | 84.1% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.76 | 65.0 | 5.40e-01 | 100.0% | 94.6% |
| 4makB00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.76 | 64.0 | 5.67e-01 | 100.0% | 90.8% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.73 | 60.0 | 5.42e-01 | 93.9% | 66.7% |
| 7ejoB01 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.73 | 63.0 | 5.34e-01 | 100.0% | 88.0% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.69 | 58.0 | 4.60e-01 | 100.0% | 60.2% |
| 1x5hA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 56.0 | 4.16e-01 | 100.0% | 42.4% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.65 | 53.0 | 4.76e-01 | 98.0% | 64.8% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.64 | 51.0 | 4.06e-01 | 93.9% | 41.8% |
| 2npnA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.63 | 49.0 | 3.94e-01 | 91.8% | 41.3% |
| 2h5eA03 | 3.30.70.3280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III | 0.63 | 51.0 | 3.80e-01 | 95.9% | 48.9% |
| 4pl0A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 48.0 | 3.20e-01 | 91.8% | 69.3% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.62 | 51.0 | 4.64e-01 | 100.0% | 70.8% |
| 2p6cA00 | 2.60.120.460 | Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like | 0.60 | 49.0 | 3.65e-01 | 93.9% | 73.0% |
| 2kdoA03 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 45.0 | 4.10e-01 | 93.9% | 85.0% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 50.0 | 3.58e-01 | 98.0% | 73.2% |
| 2j8bA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.60 | 50.0 | 4.37e-01 | 98.0% | 65.4% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.60 | 48.0 | 4.33e-01 | 100.0% | 86.8% |
| 1cbfA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.59 | 48.0 | 3.78e-01 | 98.0% | 75.2% |
| 3gqsB00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.59 | 47.0 | 3.86e-01 | 93.9% | 96.0% |
| 1ywhC03 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.58 | 47.0 | 3.95e-01 | 93.9% | 59.1% |
| 3gd7C01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 42.0 | 2.80e-01 | 85.7% | 82.4% |
| 1vmfC00 | 2.60.120.460 | Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like | 0.57 | 46.0 | 3.55e-01 | 100.0% | 85.9% |
| 3ld2B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 48.0 | 3.43e-01 | 100.0% | 66.0% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.56 | 45.0 | 3.07e-01 | 100.0% | 55.5% |
| 2qsdB02 | 3.50.100.10 | Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain | 0.56 | 42.0 | 3.69e-01 | 95.9% | 52.6% |
| 2i79D00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 47.0 | 3.36e-01 | 100.0% | 65.9% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 40.0 | 3.23e-01 | 77.6% | 36.4% |
| 1rh8A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.56 | 47.0 | 3.47e-01 | 100.0% | 53.5% |
| 3dr6B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 46.0 | 3.30e-01 | 100.0% | 65.7% |
| 3vpbB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 47.0 | 3.69e-01 | 100.0% | 67.9% |
| 2wadA02 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.55 | 40.0 | 3.01e-01 | 91.8% | 28.4% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.54 | 41.0 | 2.84e-01 | 85.7% | 38.7% |
| 4zbgA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 42.0 | 3.14e-01 | 98.0% | 42.9% |
| 3t7aA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 37.0 | 2.61e-01 | 81.6% | 96.0% |
| 1d0nA06 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.52 | 39.0 | 3.20e-01 | 98.0% | 44.9% |
| 4iwxA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 42.0 | 3.40e-01 | 100.0% | 68.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3588541 | 304.154.1.0 ↗ | a+b two layers › Alpha-beta plaits › Regulator of polyketide synthase expression N-terminal domain › Regulator of polyketide synthase expression N-terminal domain | 0.83 | 75.0 | 5.24e-01 | 100.0% | 70.3% |
| 2579422 | 4326.1.1.1 ↗ | a+b two layers › ERH-like › ERH-like › ERH-like › ER | 0.79 | 70.0 | 5.65e-01 | 100.0% | 73.4% |
| 3612075 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 52.0 | 3.42e-01 | 73.5% | 69.5% |
| 4857408 | 304.56.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like | 0.74 | 62.0 | 5.49e-01 | 100.0% | 89.3% |
| 4033537 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.73 | 60.0 | 3.88e-01 | 93.9% | 23.5% |
| 4952123 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.66 | 56.0 | 5.35e-01 | 100.0% | 93.3% |
| 4028488 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.66 | 55.0 | 4.09e-01 | 100.0% | 36.4% |
| 3515306 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.65 | 55.0 | 4.47e-01 | 100.0% | 58.0% |
| 4646775 | 304.11.1.0 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase | 0.65 | 52.0 | 4.64e-01 | 93.9% | 84.0% |
| 3687025 | 224.1.1.1 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF | 0.64 | 53.0 | 4.06e-01 | 100.0% | 42.4% |
| 1937720 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.63 | 53.0 | 4.05e-01 | 98.0% | 75.6% |
| 3729195 | 224.1.1.0 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like | 0.62 | 52.0 | 4.01e-01 | 100.0% | 42.4% |
| 3319149 | 224.1.1.3 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen | 0.62 | 54.0 | 3.84e-01 | 100.0% | 36.1% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 50.0 | 4.99e-01 | 93.9% | 96.0% |
| 4024040 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.61 | 49.0 | 4.66e-01 | 100.0% | 93.8% |
| 3738773 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.60 | 46.0 | 4.60e-01 | 100.0% | 87.3% |
| 4937906 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.60 | 44.0 | 3.13e-01 | 93.9% | 23.2% |
| 3479367 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.60 | 50.0 | 4.71e-01 | 100.0% | 81.2% |
| 4950851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 45.0 | 4.64e-01 | 87.8% | 97.8% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.59 | 45.0 | 4.62e-01 | 91.8% | 100.0% |
| 3941557 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.59 | 46.0 | 3.03e-01 | 91.8% | 65.1% |
| 2028017 | 881.6.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › FrpD › FrpD › FrpC | 0.57 | 41.0 | 2.73e-01 | 77.6% | 25.9% |
| 4093838 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.56 | 49.0 | 3.31e-01 | 100.0% | 41.1% |
| 5062096 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.55 | 38.0 | 2.53e-01 | 79.6% | 84.8% |
| 3787619 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.50 | 43.0 | 3.32e-01 | 100.0% | 67.0% |