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MN234170.1__QFG08860.1__PBI_MALAGASYROSE_10__00008

Bact-Vir

MN234170.1__QFG08860.1__PBI_MALAGASYROSE_10__00008

Identity

Accession:
MN234170 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-91
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.73 66.0 6.11e-01 100.0% 94.8%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.72 57.0 5.91e-01 98.9% 90.6%
1s7hA01 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 53.0 5.57e-01 98.9% 91.3%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.69 61.0 5.81e-01 100.0% 92.6%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 56.0 4.92e-01 91.1% 92.0%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.68 59.0 5.36e-01 98.9% 100.0%
3wdhA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.68 44.0 4.55e-01 72.2% 70.2%
4paaA04 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.68 58.0 5.31e-01 95.6% 72.6%
4ezeB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.67 53.0 3.73e-01 100.0% 26.6%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 53.0 5.33e-01 98.9% 86.5%
2e8yA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.66 45.0 4.51e-01 72.2% 68.9%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 46.0 4.86e-01 100.0% 81.7%
1zpvA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.65 53.0 5.41e-01 100.0% 94.1%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.64 55.0 4.46e-01 95.6% 93.2%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 48.0 5.05e-01 98.9% 87.8%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 55.0 5.45e-01 98.9% 89.5%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.64 50.0 5.38e-01 98.9% 100.0%
3lnlB02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 49.0 4.99e-01 98.9% 86.4%
3b82A06 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 46.0 4.23e-01 98.9% 58.7%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 50.0 3.90e-01 88.9% 74.0%
3m07A04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 37.0 4.08e-01 71.1% 72.9%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.63 51.0 5.17e-01 90.0% 93.3%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 50.0 5.02e-01 98.9% 89.9%
3qpiA00 3.30.70.3420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 55.0 4.44e-01 98.9% 55.5%
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 45.0 4.45e-01 98.9% 71.7%
5h9kA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 49.0 4.18e-01 90.0% 94.8%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 50.0 5.09e-01 98.9% 93.3%
7qrlA01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.60 44.0 3.92e-01 78.9% 76.3%
6tepC02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.59 52.0 4.19e-01 100.0% 95.0%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 46.0 3.84e-01 84.4% 52.8%
1e5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 53.0 4.46e-01 100.0% 90.6%
1kvkA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.58 53.0 4.49e-01 100.0% 98.0%
4oddA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 52.0 4.42e-01 100.0% 90.6%
4nyqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 48.0 4.08e-01 93.3% 96.1%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.57 52.0 4.38e-01 100.0% 89.2%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 48.0 3.85e-01 94.4% 91.3%
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 40.0 3.35e-01 74.4% 98.1%
3cjyA00 2.40.160.210 Mainly Beta › Beta Barrel › Porin › Acyl-CoA thioesterase, double hotdog domain 0.55 40.0 3.01e-01 78.9% 85.8%
2ckwA03 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 48.0 4.49e-01 100.0% 81.9%
1c8uA02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 34.0 3.12e-01 71.1% 48.7%
5ic7A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 37.0 2.53e-01 70.0% 96.8%
3mqqB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 36.0 3.37e-01 70.0% 88.1%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 44.0 3.92e-01 88.9% 90.6%
3mq0B02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 40.0 3.31e-01 82.2% 98.3%
1cbyA00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.53 36.0 2.79e-01 70.0% 64.3%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 38.0 3.26e-01 76.7% 75.5%
3zqsA02 3.10.110.20 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › RWD domain-like 0.53 42.0 4.14e-01 88.9% 91.8%
2ov9C01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 43.0 3.68e-01 91.1% 90.5%
1k5dB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 35.0 3.05e-01 70.0% 59.6%
3hduA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 3.63e-01 91.1% 91.4%
3e8pA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 42.0 3.60e-01 91.1% 90.2%
1stzA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.51 38.0 3.29e-01 80.0% 84.6%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 45.0 3.72e-01 100.0% 80.5%
2fwvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.32e-01 90.0% 73.2%
2pimA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 41.0 3.66e-01 88.9% 91.7%
2qwzA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 40.0 3.60e-01 88.9% 92.5%
6fopA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.50 40.0 3.12e-01 91.1% 56.2%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010477 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.79 72.0 6.99e-01 98.9% 98.0%
4997522 304.12.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 0.74 61.0 6.45e-01 100.0% 100.0%
4626453 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.73 66.0 4.97e-01 100.0% 97.7%
5048300 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.72 56.0 5.33e-01 100.0% 71.4%
3611862 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.71 63.0 4.85e-01 100.0% 45.9%
3772559 304.159.1.3 a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB › KH_Vigilin 0.70 59.0 5.23e-01 100.0% 63.1%
4945049 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.69 53.0 5.21e-01 98.9% 76.8%
3592905 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.69 62.0 4.55e-01 100.0% 39.3%
4358407 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.69 61.0 5.77e-01 100.0% 97.3%
5033589 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.68 62.0 4.59e-01 97.8% 99.1%
3801027 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.68 61.0 4.22e-01 100.0% 30.3%
4483138 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.68 55.0 5.39e-01 90.0% 87.0%
2068824 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.68 60.0 4.15e-01 100.0% 29.4%
3275147 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.68 60.0 4.29e-01 100.0% 42.2%
3849773 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.68 60.0 4.39e-01 100.0% 40.8%
4121783 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.68 60.0 4.31e-01 100.0% 40.0%
3632646 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.67 60.0 4.38e-01 100.0% 40.4%
3486910 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.67 59.0 4.36e-01 100.0% 38.0%
3509756 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.67 60.0 4.65e-01 100.0% 46.5%
4376363 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.67 59.0 4.49e-01 100.0% 44.9%
4375029 304.107.1.1 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.67 59.0 4.22e-01 100.0% 32.9%
2529479 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.66 60.0 4.45e-01 98.9% 98.2%
3963907 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.66 57.0 4.40e-01 100.0% 41.9%
3286384 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 50.0 4.50e-01 82.2% 97.6%
3590710 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.65 53.0 5.29e-01 98.9% 85.3%
3296454 331.1.1.20 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AAA_assoc 0.65 53.0 4.92e-01 88.9% 93.9%
4121976 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.64 56.0 4.09e-01 100.0% 36.5%
3944961 304.6.1.0 a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.64 51.0 3.72e-01 100.0% 31.8%
4947985 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.62 56.0 4.84e-01 98.9% 94.8%
3463387 304.107.1.0 a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain 0.62 54.0 3.89e-01 100.0% 37.8%
5036809 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.61 54.0 3.94e-01 98.9% 93.7%
4534735 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.61 54.0 4.52e-01 98.9% 82.6%
5069377 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.59 40.0 2.52e-01 70.0% 15.7%
3952932 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.59 41.0 3.35e-01 72.2% 72.4%
3467082 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.59 54.0 4.38e-01 100.0% 89.1%
3479784 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 40.0 3.52e-01 70.0% 71.9%
4963628 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.59 51.0 4.34e-01 98.9% 91.6%
3409682 216.1.1.10 a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d3 0.59 45.0 4.18e-01 82.2% 75.7%
3551908 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.58 40.0 3.30e-01 70.0% 79.4%
5014564 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.58 52.0 4.38e-01 98.9% 92.0%
4492391 223.1.1.5 a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA 0.58 44.0 3.66e-01 81.1% 87.5%
3242056 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 39.0 3.30e-01 70.0% 71.0%
5003298 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.58 40.0 2.47e-01 71.1% 15.6%
5052082 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.57 39.0 3.45e-01 70.0% 85.2%
166471 223.1.1.4 a+b three layers › Profilin-like › sensor domains › sensor domains › IclR 0.57 40.0 3.35e-01 74.4% 98.1%
5080306 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.56 38.0 3.15e-01 70.0% 75.2%
3245738 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 43.0 4.09e-01 85.6% 77.3%
4453642 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 38.0 3.05e-01 70.0% 42.3%
5034597 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.55 37.0 3.24e-01 70.0% 85.5%
5046707 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.54 48.0 4.26e-01 98.9% 86.5%
5035495 300.1.1.6 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Regulator_TrmB 0.54 37.0 3.13e-01 70.0% 77.5%
3936730 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 36.0 3.33e-01 70.0% 71.8%
4030120 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 42.0 2.69e-01 92.2% 69.2%
3255563 216.1.1.10 a+b two layers › UBC-like › UBC-like › UBC-like › FANCL_d3 0.51 41.0 3.93e-01 88.9% 84.5%
4116942 2004.1.1.22 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sigma54_activat 0.51 38.0 2.62e-01 81.1% 38.1%
4987450 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 34.0 2.87e-01 70.0% 42.4%