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MN234187.1__QFG10322.1__SEA_DYOEDAFOS_94__00094
Bact-VirMN234187.1__QFG10322.1__SEA_DYOEDAFOS_94__00094
Identity
- Accession:
- MN234187 ↗
- Kingdom:
- phage
Quality
60.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Vilmaviridae›
Bromdenvirus›
Mycobacterium_phage_DyoEdafos
TaxID: 2599860
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 106-170
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bhoA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.68 | 45.0 | 3.79e-01 | 81.5% | 40.9% |
| 5zr6A02 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.66 | 47.0 | 4.56e-01 | 76.9% | 93.4% |
| 2kafA00 | 3.40.30.150 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Coronavirus polyprotein cleavage domain | 0.64 | 41.0 | 4.11e-01 | 80.0% | 64.2% |
| 1fx7B03 | 2.30.30.90 | Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) | 0.62 | 45.0 | 4.26e-01 | 78.5% | 92.5% |
| 1xksA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 51.0 | 3.18e-01 | 95.4% | 41.2% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.60 | 37.0 | 3.66e-01 | 75.4% | 56.9% |
| 2bcoA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.58 | 42.0 | 2.81e-01 | 76.9% | 23.4% |
| 2l5qA01 | 2.30.30.730 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 40.0 | 4.27e-01 | 98.5% | 94.0% |
| 4ii1A02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 43.0 | 4.59e-01 | 81.5% | 92.9% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 41.0 | 3.82e-01 | 81.5% | 58.8% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 40.0 | 4.31e-01 | 78.5% | 96.0% |
| 6jwfA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 49.0 | 3.06e-01 | 98.5% | 87.4% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.80e-01 | 80.0% | 93.2% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.56 | 42.0 | 3.80e-01 | 86.2% | 83.8% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.56 | 48.0 | 3.90e-01 | 100.0% | 84.0% |
| 2f2hA01 | 2.60.40.1760 | Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) | 0.56 | 42.0 | 2.90e-01 | 84.6% | 41.6% |
| 2nvnA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.55 | 39.0 | 3.28e-01 | 78.5% | 96.7% |
| 1yw4B00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 39.0 | 2.56e-01 | 76.9% | 20.1% |
| 7qzqA01 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.54 | 48.0 | 3.07e-01 | 100.0% | 66.7% |
| 5hy7B02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 2.95e-01 | 96.9% | 55.1% |
| 3eweA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 45.0 | 3.10e-01 | 100.0% | 65.5% |
| 6n8pA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.53 | 44.0 | 2.80e-01 | 95.4% | 40.5% |
| 1yreC00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 40.0 | 3.02e-01 | 87.7% | 37.9% |
| 2ivwA01 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 42.0 | 3.98e-01 | 92.3% | 100.0% |
| 3p91A00 | 3.70.10.10 | Alpha Beta › Box › Proliferating Cell Nuclear Antigen › | 0.51 | 39.0 | 2.67e-01 | 84.6% | 95.9% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5016556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 49.0 | 4.40e-01 | 78.5% | 86.7% |
| 5036616 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.63 | 46.0 | 4.50e-01 | 81.5% | 72.9% |
| 4116921 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.61 | 43.0 | 4.43e-01 | 76.9% | 80.0% |
| 3581631 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.61 | 42.0 | 4.24e-01 | 72.3% | 95.4% |
| 4347999 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.61 | 41.0 | 4.16e-01 | 81.5% | 70.8% |
| 4120506 | 243.11.1.4 ↗ | a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 | 0.61 | 54.0 | 5.03e-01 | 98.5% | 85.0% |
| 2803292 | 5.1.3.25 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid | 0.60 | 50.0 | 3.27e-01 | 96.9% | 52.5% |
| 5066141 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.58 | 41.0 | 4.18e-01 | 81.5% | 76.9% |
| 4063400 | 2011.1.1.18 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › AstE_AspA_cat | 0.57 | 41.0 | 2.80e-01 | 76.9% | 25.0% |
| 3935172 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.57 | 48.0 | 3.80e-01 | 98.5% | 95.9% |
| 3238405 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 42.0 | 4.48e-01 | 83.1% | 98.2% |
| 3834747 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.57 | 40.0 | 3.98e-01 | 81.5% | 71.4% |
| 3291045 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.56 | 48.0 | 4.12e-01 | 95.4% | 97.1% |
| 4662947 | 4.1.1.297 ↗ | beta barrels › SH3 › SH3 › SH3 › YajC | 0.56 | 40.0 | 4.08e-01 | 78.5% | 80.0% |
| 4964421 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.56 | 41.0 | 4.12e-01 | 81.5% | 83.1% |
| 3995339 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.55 | 43.0 | 3.34e-01 | 86.2% | 68.0% |
| 3839972 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.55 | 40.0 | 3.93e-01 | 81.5% | 73.3% |
| 4952854 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.55 | 40.0 | 4.04e-01 | 83.1% | 81.5% |
| 4938120 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.54 | 40.0 | 3.94e-01 | 81.5% | 75.7% |
| 4932588 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.54 | 40.0 | 4.09e-01 | 81.5% | 84.6% |
| 3391006 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 47.0 | 3.04e-01 | 100.0% | 48.3% |
| 1916716 | 5.1.4.63 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PorZ_N_b_propeller | 0.54 | 46.0 | 3.07e-01 | 98.5% | 53.7% |
| 3388897 | 5.1.4.407 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2, Alsin_RLD | 0.52 | 47.0 | 2.88e-01 | 100.0% | 95.8% |
| 3959805 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 38.0 | 3.37e-01 | 83.1% | 54.0% |