Back to structures

MN234206.1__QFG12088.1__PBI_RACECAR_35__00035

Bact-Vir

MN234206.1__QFG12088.1__PBI_RACECAR_35__00035

Identity

Accession:
MN234206 ↗
Kingdom:
phage

Quality

87.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-55
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3v9fA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 47.0 2.94e-01 76.9% 25.4%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 48.0 2.98e-01 78.8% 23.7%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 46.0 2.87e-01 78.8% 39.6%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.63 53.0 3.50e-01 96.2% 84.5%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 48.0 3.48e-01 100.0% 28.8%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 3.61e-01 80.8% 47.0%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.62 52.0 3.29e-01 100.0% 43.2%
3kifD00 2.20.25.650 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Tachylectin-2-like 0.62 46.0 3.86e-01 80.8% 76.9%
4qa8A00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.62 47.0 3.24e-01 88.5% 61.9%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.22e-01 100.0% 97.4%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.60 50.0 3.74e-01 96.2% 62.8%
1j0hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 3.54e-01 88.5% 85.6%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 50.0 4.08e-01 100.0% 99.0%
2knoA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 47.0 3.87e-01 100.0% 100.0%
2xziA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 43.0 2.63e-01 82.7% 44.4%
1ni5A02 1.20.59.20 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › 0.57 38.0 3.29e-01 94.2% 41.9%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.57 42.0 3.17e-01 80.8% 33.6%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 2.95e-01 98.1% 97.8%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 40.0 3.07e-01 75.0% 95.1%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.56 45.0 3.99e-01 94.2% 96.4%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 41.0 3.24e-01 80.8% 99.2%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.55 44.0 4.20e-01 92.3% 96.9%
1m3qA01 3.30.310.40 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.55 40.0 3.39e-01 78.8% 79.8%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.60e-01 84.6% 52.3%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 38.0 3.74e-01 73.1% 65.5%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.43e-01 84.6% 57.8%
4b8eB00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.55 42.0 3.05e-01 94.2% 42.7%
4c0tA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 45.0 3.14e-01 98.1% 45.9%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.55 39.0 3.11e-01 80.8% 98.5%
1bymA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.54 46.0 3.85e-01 100.0% 79.4%
2f09A00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.54 41.0 3.73e-01 92.3% 95.1%
4omfB02 3.10.450.750 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 4.29e-01 82.7% 100.0%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.54 43.0 3.13e-01 98.1% 86.3%
2g3mA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 37.0 3.21e-01 73.1% 98.9%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 38.0 2.45e-01 78.8% 34.9%
3pggA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 45.0 4.03e-01 98.1% 83.3%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.90e-01 76.9% 93.8%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 43.0 3.08e-01 100.0% 82.4%
2y3vD00 2.170.210.20 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › Spindle assembly abnormal protein 6, N-terminal domain 0.53 38.0 2.91e-01 82.7% 87.7%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.52 34.0 2.76e-01 71.2% 30.5%
3agrA02 3.30.420.540 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 40.0 2.54e-01 100.0% 61.8%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 2.54e-01 94.2% 88.7%
1xe7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 38.0 2.71e-01 84.6% 69.9%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.50 40.0 2.61e-01 100.0% 88.4%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.50 42.0 2.75e-01 98.1% 85.9%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4120366 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.72 54.0 5.31e-01 80.8% 80.0%
4203469 375.1.1.47 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC 0.69 52.0 5.12e-01 80.8% 78.2%
3922711 5.1.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.65 48.0 3.22e-01 80.8% 34.1%
4467867 3784.1.1.0 a+b two layers › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related › Putative lipoprotein CPF_1278-related 0.65 54.0 4.07e-01 100.0% 91.0%
3468148 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.65 55.0 3.81e-01 100.0% 37.9%
3618164 5.1.4.298 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.64 47.0 2.68e-01 80.8% 14.2%
3600457 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.64 53.0 3.30e-01 100.0% 45.6%
3235404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 49.0 3.17e-01 86.5% 18.6%
3293107 4286.1.1.1 beta complex topology › At5g01610-like › At5g01610-like › At5g01610-like › DUF538 0.64 53.0 4.21e-01 100.0% 97.5%
3213871 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 47.0 2.94e-01 84.6% 37.9%
3254963 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.62 54.0 3.77e-01 100.0% 62.9%
3225229 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 48.0 3.09e-01 86.5% 18.8%
3226293 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.62 47.0 3.07e-01 86.5% 19.2%
5053814 3740.1.1.0 alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta 0.61 46.0 3.10e-01 82.7% 77.6%
3212404 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 47.0 3.07e-01 86.5% 19.2%
3227136 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.61 47.0 3.19e-01 86.5% 23.3%
3723017 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 47.0 4.43e-01 84.6% 86.2%
4317534 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 50.0 3.31e-01 98.1% 94.0%
5003416 3487.1.1.0 a+b three layers › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 › Integron cassette protein VCH_CASS3 0.61 46.0 3.66e-01 84.6% 81.6%
4388250 5.1.4.26 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.60 43.0 2.71e-01 78.8% 22.5%
3211176 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 46.0 3.00e-01 86.5% 19.2%
3222725 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.60 46.0 2.90e-01 86.5% 16.7%
3235669 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 46.0 3.56e-01 86.5% 39.2%
4002646 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 42.0 2.72e-01 75.0% 65.4%
3242542 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 45.0 2.98e-01 86.5% 19.2%
3247669 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.60 45.0 2.97e-01 86.5% 19.3%
3226910 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 45.0 3.06e-01 86.5% 48.6%
3199213 2002.1.1.83 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 0.59 43.0 2.73e-01 82.7% 84.6%
3243587 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.59 45.0 2.83e-01 86.5% 34.0%
3326520 331.23.1.7 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.59 49.0 4.45e-01 100.0% 89.3%
4010196 331.12.1.0 a+b two layers › TBP-like › YugN-like › YugN-like 0.59 49.0 3.96e-01 96.2% 82.9%
3218627 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 44.0 3.04e-01 86.5% 22.3%
3436173 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 49.0 3.08e-01 100.0% 23.3%
3229102 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 44.0 2.91e-01 86.5% 19.6%
5060936 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.59 41.0 3.46e-01 78.8% 42.2%
3934175 220.1.1.168 beta barrels › PH domain-like › PH domain-like › PH domain-like › Tmpp129 0.58 43.0 3.35e-01 80.8% 75.8%
3595430 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 44.0 2.97e-01 82.7% 61.0%
4981604 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.58 39.0 2.90e-01 73.1% 30.3%
3220002 2484.1.1.200 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.58 44.0 2.87e-01 86.5% 35.4%
3778012 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.58 42.0 3.66e-01 80.8% 87.1%
3223252 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 43.0 2.86e-01 86.5% 32.7%
3806421 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.58 47.0 4.45e-01 96.2% 98.5%
3243873 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.58 44.0 2.82e-01 86.5% 20.7%
5043213 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.58 47.0 3.26e-01 96.2% 86.0%
4024069 101.1.12.3 alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.56 42.0 3.08e-01 84.6% 56.2%
5001903 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.24e-01 96.2% 85.7%
4388719 3018.1.1.1 a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS 0.56 37.0 3.19e-01 94.2% 40.0%
3225057 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 42.0 3.02e-01 86.5% 25.9%
3440727 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 2.65e-01 100.0% 41.0%
3192398 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 44.0 2.62e-01 96.2% 73.2%
3516743 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.55 46.0 3.28e-01 98.1% 47.1%
3743110 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.55 40.0 3.31e-01 82.7% 96.2%
4539117 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.55 40.0 3.05e-01 84.6% 44.0%
3253996 5.1.5.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PEP5_VPS11_N 0.55 46.0 2.84e-01 100.0% 98.6%
4344687 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.54 40.0 3.35e-01 84.6% 62.9%
3814929 5.1.5.86 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Kelch_1 0.54 46.0 2.89e-01 98.1% 91.5%
3935730 241.10.1.1 a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.53 45.0 3.86e-01 100.0% 71.1%
3270724 206.1.3.4 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › mRNA_cap_enzyme 0.53 41.0 2.79e-01 92.3% 82.6%
3927790 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 36.0 3.80e-01 73.1% 82.2%
4249852 2005.1.1.7 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.52 42.0 2.78e-01 100.0% 21.1%
3928614 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 42.0 3.04e-01 92.3% 93.3%
3577380 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.52 40.0 3.71e-01 88.5% 80.0%
3705577 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.52 43.0 3.20e-01 98.1% 48.0%
4928397 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.51 36.0 2.86e-01 78.8% 100.0%
4560221 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 35.0 2.36e-01 71.2% 94.3%
4004053 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.51 44.0 3.66e-01 100.0% 55.8%
3748837 330.9.1.1 a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p › Tnp_22_dsRBD 0.51 40.0 3.58e-01 92.3% 72.5%
3994190 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.50 39.0 2.55e-01 100.0% 74.7%
3520064 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.50 36.0 3.44e-01 84.6% 77.1%