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MN234206.1__QFG12159.1__PBI_RACECAR_112__00112
Bact-VirMN234206.1__QFG12159.1__PBI_RACECAR_112__00112
Identity
- Accession:
- MN234206 ↗
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-102
Domain cluster:
rep: OR159659.1__WKW85550.1__SEA_REYNAULD_98__00098__D63-173
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26096.1 best | DUF8033 | 48.9 | 5.80e-13 | 86.6% | 76.9% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pyrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.73 | 39.0 | 3.59e-01 | 97.9% | 41.7% |
| 4pv6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.66 | 49.0 | 4.26e-01 | 80.4% | 68.8% |
| 1ggpA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.65 | 40.0 | 3.50e-01 | 97.9% | 40.9% |
| 3qi7A02 | 3.40.50.11390 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 36.0 | 3.02e-01 | 97.9% | 31.7% |
| 4my0A02 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 48.0 | 4.29e-01 | 81.4% | 72.9% |
| 3ld2B00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 47.0 | 3.99e-01 | 80.4% | 71.6% |
| 4rz2B00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 42.0 | 3.15e-01 | 74.2% | 76.2% |
| 4alzA03 | 3.30.70.1770 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 37.0 | 4.37e-01 | 89.7% | 96.9% |
| 1w5dA02 | 3.50.80.20 | Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 | 0.59 | 34.0 | 3.41e-01 | 99.0% | 54.9% |
| 1knwA02 | 3.20.20.10 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase | 0.58 | 41.0 | 3.07e-01 | 73.2% | 51.0% |
| 3c0kA02 | 3.30.750.80 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › RNA methyltransferase domain (HRMD) like | 0.57 | 44.0 | 4.28e-01 | 100.0% | 75.2% |
| 2bfdB02 | 3.40.50.920 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 40.0 | 3.67e-01 | 74.2% | 98.4% |
| 1f46B00 | 3.30.1400.10 | Alpha Beta › 2-Layer Sandwich › Cell Division Protein Zipa; Chain: A, › ZipA, C-terminal FtsZ-binding domain | 0.55 | 45.0 | 4.02e-01 | 89.7% | 67.1% |
| 3laxA00 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.55 | 38.0 | 3.73e-01 | 90.7% | 66.0% |
| 2b99C00 | 3.40.50.960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase | 0.54 | 37.0 | 3.28e-01 | 72.2% | 59.9% |
| 4r0mA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.54 | 38.0 | 3.66e-01 | 90.7% | 64.8% |
| 2dirA01 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.54 | 35.0 | 3.73e-01 | 100.0% | 74.7% |
| 6he0A01 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.53 | 37.0 | 3.65e-01 | 90.7% | 66.4% |
| 2o5nA02 | 3.30.500.30 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.52 | 39.0 | 3.36e-01 | 79.4% | 82.8% |
| 3l9rA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.52 | 38.0 | 3.21e-01 | 94.8% | 43.4% |
| 2jmkA00 | 3.30.420.600 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Thermoplasma acidophilum protein TA0956 | 0.51 | 39.0 | 3.76e-01 | 94.8% | 71.8% |
| 3w5xA00 | 3.30.70.1350 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cation efflux protein, cytoplasmic domain | 0.51 | 35.0 | 3.86e-01 | 90.7% | 87.5% |
| 1iftA01 | 3.40.420.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 | 0.51 | 43.0 | 3.57e-01 | 93.8% | 64.4% |
| 3woyA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.51 | 38.0 | 2.92e-01 | 81.4% | 93.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3834431 | 213.1.1.73 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › IDM1_C | 0.69 | 58.0 | 4.38e-01 | 91.8% | 66.0% |
| 4993815 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.65 | 35.0 | 3.75e-01 | 99.0% | 58.8% |
| 3715118 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 45.0 | 3.67e-01 | 73.2% | 74.3% |
| 4957687 | 213.5.1.1 ↗ | a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain › AlkZ-like | 0.63 | 47.0 | 4.46e-01 | 79.4% | 83.5% |
| 3954986 | 213.5.1.0 ↗ | a+b three layers › Nat/Ivy › AlkZ C-terminal domain › AlkZ C-terminal domain | 0.63 | 47.0 | 4.33e-01 | 80.4% | 72.7% |
| 3980816 | 3261.1.1.0 ↗ | a+b two layers › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb › amino-terminal domain of OmpATb | 0.60 | 38.0 | 4.17e-01 | 89.7% | 81.3% |
| 4947791 | 4143.1.1.12 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › ThiI | 0.58 | 36.0 | 3.57e-01 | 100.0% | 59.0% |
| 4199874 | 4143.1.1.1 ↗ | a+b two layers › THUMP domain-like › THUMP domain-like › THUMP domain-like › THUMP | 0.58 | 37.0 | 3.70e-01 | 100.0% | 62.0% |
| 3284171 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.57 | 49.0 | 4.33e-01 | 100.0% | 96.7% |
| 4045455 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.57 | 34.0 | 3.58e-01 | 100.0% | 65.9% |
| 4956959 | 7539.1.1.1 ↗ | a/b three-layered sandwiches › Creatininase › Creatininase › Creatininase › Creatininase | 0.56 | 39.0 | 2.98e-01 | 72.2% | 47.5% |
| None | — | 0.56 | 42.0 | 2.98e-01 | 100.0% | 24.9% | |
| 3258438 | 63.1.1.0 ↗ | beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain | 0.55 | 41.0 | 3.60e-01 | 78.4% | 76.6% |
| 5009869 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.55 | 34.0 | 4.07e-01 | 89.7% | 93.8% |
| 4989671 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.54 | 37.0 | 3.93e-01 | 89.7% | 80.0% |
| 3278058 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.54 | 37.0 | 4.09e-01 | 90.7% | 87.5% |
| 4950969 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.54 | 43.0 | 2.78e-01 | 87.6% | 22.8% |
| 5018659 | 327.5.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 | 0.54 | 37.0 | 3.60e-01 | 90.7% | 64.8% |
| 3394261 | 327.11.1.4 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › MRP-S24 | 0.53 | 37.0 | 3.35e-01 | 71.1% | 85.9% |
| 4045472 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.53 | 36.0 | 3.92e-01 | 90.7% | 85.0% |
| 3840126 | 313.1.1.1 ↗ | a+b complex topology › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain › MurB_C | 0.52 | 36.0 | 3.71e-01 | 71.1% | 86.2% |
| 4938533 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.52 | 42.0 | 2.52e-01 | 87.6% | 14.2% |
| 5034898 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.52 | 36.0 | 3.82e-01 | 90.7% | 81.2% |
| 5072460 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.52 | 36.0 | 3.85e-01 | 90.7% | 82.4% |
| 4958712 | 327.5.1.3 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C_2 | 0.52 | 36.0 | 3.57e-01 | 90.7% | 69.0% |
| 4955281 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.52 | 36.0 | 3.84e-01 | 90.7% | 82.4% |
| 5071430 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.52 | 35.0 | 3.66e-01 | 90.7% | 75.6% |
| 4953262 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.52 | 36.0 | 3.88e-01 | 89.7% | 86.3% |
| 5072459 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.52 | 35.0 | 3.92e-01 | 91.8% | 90.7% |
| 3603362 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.52 | 32.0 | 3.62e-01 | 89.7% | 87.1% |
| 4996359 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.51 | 37.0 | 3.56e-01 | 91.8% | 64.3% |
| 5022436 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.51 | 37.0 | 3.95e-01 | 90.7% | 88.0% |
| 4950923 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.51 | 36.0 | 3.20e-01 | 90.7% | 50.7% |
| 4927818 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.51 | 36.0 | 3.79e-01 | 90.7% | 80.0% |
| 3596238 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.51 | 37.0 | 4.08e-01 | 88.7% | 93.8% |
| 3603735 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.50 | 35.0 | 3.07e-01 | 79.4% | 47.3% |