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MN234207.1__QFG12405.1__PBI_RANCH_79__00079

Bact-Vir

MN234207.1__QFG12405.1__PBI_RANCH_79__00079

Identity

Accession:
MN234207 ↗
Kingdom:
phage

Quality

73.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lambovirus› Gordonia_phage_Ranch

TaxID: 2599848

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 46-100
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13392.13 best HNH_3 25.5 1.10e-05 52.7% 63.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7sbeA01 1.10.132.70 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.56 44.0 3.02e-01 90.9% 72.2%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.56 36.0 3.63e-01 90.9% 65.5%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.14e-01 85.5% 84.1%
4f03A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 32.0 2.65e-01 70.9% 29.5%
3n5oA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 34.0 2.99e-01 70.9% 44.9%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4303143 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.74 58.0 5.02e-01 85.5% 60.0%
3386711 5069.1.1.5 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_II 0.55 38.0 2.94e-01 78.2% 66.7%
3204193 101.1.2.86 ↗ alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.51 36.0 2.75e-01 74.5% 90.7%