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MN234209.1__QFG12561.1__PBI_TOAKA_62__00061
Bact-VirMN234209.1__QFG12561.1__PBI_TOAKA_62__00061
Identity
- Accession:
- MN234209 ↗
- Kingdom:
- phage
Quality
79.1
mean pLDDT
Taxonomy
TaxID: 2599881
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-69
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1aq3A00 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.72 | 59.0 | 4.79e-01 | 92.3% | 55.0% |
| 3a8pB01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.69 | 47.0 | 3.84e-01 | 100.0% | 39.7% |
| 2iqiB00 | 3.40.50.10610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component | 0.64 | 57.0 | 4.23e-01 | 100.0% | 77.8% |
| 4kwyA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.63 | 57.0 | 4.41e-01 | 100.0% | 50.4% |
| 4ad8A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 44.0 | 2.92e-01 | 75.4% | 64.3% |
| 2jxpA01 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.61 | 52.0 | 4.13e-01 | 100.0% | 49.6% |
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.59 | 48.0 | 2.89e-01 | 90.8% | 48.9% |
| 2n8xA00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.58 | 48.0 | 3.73e-01 | 98.5% | 41.0% |
| 2yqrA01 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 48.0 | 4.19e-01 | 100.0% | 99.0% |
| 2kx2A00 | 3.30.780.30 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › | 0.56 | 45.0 | 4.01e-01 | 90.8% | 87.5% |
| 7r9xA02 | 3.30.559.30 | Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Nonribosomal peptide synthetase, condensation domain | 0.55 | 44.0 | 2.97e-01 | 86.2% | 81.2% |
| 5t0oA03 | 3.30.70.1320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain like | 0.54 | 45.0 | 4.02e-01 | 98.5% | 91.1% |
| 3byqA00 | 3.30.1330.110 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 | 0.54 | 41.0 | 2.97e-01 | 83.1% | 32.5% |
| 3weoA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 41.0 | 3.37e-01 | 86.2% | 69.3% |
| 7uclA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.53 | 41.0 | 3.50e-01 | 83.1% | 82.4% |
| 3ga8A00 | 3.10.20.860 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.53 | 41.0 | 4.07e-01 | 95.4% | 82.1% |
| 4nspA00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.52 | 46.0 | 3.15e-01 | 100.0% | 92.0% |
| 1nyeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.51 | 39.0 | 3.15e-01 | 87.7% | 39.9% |
| 3zqmA00 | 6.10.140.2160 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 34.0 | 3.62e-01 | 70.8% | 88.1% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 34.0 | 3.08e-01 | 89.2% | 47.9% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.50 | 32.0 | 3.15e-01 | 89.2% | 55.8% |
| 3vqiA01 | 3.10.20.620 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.50 | 37.0 | 3.20e-01 | 93.8% | 49.1% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3253704 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.70 | 56.0 | 3.56e-01 | 86.2% | 47.7% |
| 3517405 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 54.0 | 5.35e-01 | 92.3% | 80.0% |
| 3265334 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.68 | 54.0 | 4.55e-01 | 92.3% | 50.9% |
| 2659065 | 265.1.1.3 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › AP205_coat | 0.65 | 46.0 | 4.08e-01 | 76.9% | 55.4% |
| 3484885 | 304.55.2.0 ↗ | a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like | 0.65 | 44.0 | 3.46e-01 | 76.9% | 32.4% |
| 3968185 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.65 | 52.0 | 3.06e-01 | 84.6% | 43.6% |
| 4521994 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.64 | 51.0 | 3.11e-01 | 84.6% | 47.0% |
| 3939681 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.64 | 56.0 | 3.52e-01 | 95.4% | 28.2% |
| 1070223 | 7503.1.1.4 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE | 0.63 | 57.0 | 4.41e-01 | 100.0% | 50.4% |
| 3992985 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.62 | 46.0 | 4.19e-01 | 78.5% | 85.9% |
| 3593889 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 47.0 | 3.91e-01 | 98.5% | 46.4% |
| 3787850 | 304.159.1.0 ↗ | a+b two layers › Alpha-beta plaits › Alpha-beta plait domain in NisB › Alpha-beta plait domain in NisB | 0.60 | 47.0 | 4.03e-01 | 87.7% | 90.9% |
| 4213219 | 109.21.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | 0.60 | 48.0 | 2.72e-01 | 87.7% | 33.7% |
| 1388665 | 5085.1.1.1 ↗ | a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP | 0.59 | 48.0 | 2.89e-01 | 90.8% | 48.8% |
| 3741530 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.59 | 49.0 | 3.78e-01 | 89.2% | 42.8% |
| 3199096 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.59 | 51.0 | 3.35e-01 | 93.8% | 50.8% |
| 5070602 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.58 | 47.0 | 3.77e-01 | 100.0% | 43.6% |
| 3405436 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 47.0 | 3.92e-01 | 92.3% | 52.2% |
| 3835676 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.57 | 39.0 | 2.75e-01 | 72.3% | 68.5% |
| 3212196 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 40.0 | 3.34e-01 | 87.7% | 42.6% |
| 3592204 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.55 | 47.0 | 2.80e-01 | 90.8% | 90.4% |
| 4962024 | 298.1.1.24 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 | 0.55 | 52.0 | 3.63e-01 | 100.0% | 85.4% |
| 3845123 | 383.1.2.0 ↗ | few secondary structure elements › Defensin-like › Defensin-related › Laterosporulin | 0.55 | 33.0 | 3.84e-01 | 73.8% | 97.4% |
| 4862375 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 45.0 | 2.85e-01 | 95.4% | 55.5% |
| 4003239 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.55 | 47.0 | 3.36e-01 | 96.9% | 97.1% |
| 3913071 | 220.1.1.52 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C | 0.55 | 38.0 | 3.02e-01 | 80.0% | 34.3% |
| 3454218 | 109.4.1.890 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C | 0.54 | 49.0 | 3.36e-01 | 98.5% | 32.6% |
| 3928806 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.53 | 39.0 | 3.49e-01 | 86.2% | 51.4% |
| 3599680 | 304.114.1.0 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain | 0.53 | 41.0 | 3.31e-01 | 92.3% | 41.5% |
| 5082037 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.52 | 37.0 | 3.37e-01 | 90.8% | 54.3% |
| 3493752 | 158.1.1.1 ↗ | alpha bundles › Lipoxygenase › Lipoxygenase › Lipoxygenase › Lipoxygenase | 0.51 | 46.0 | 2.66e-01 | 98.5% | 52.6% |
| 3797048 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.51 | 36.0 | 3.20e-01 | 76.9% | 79.0% |
| 3301880 | 2003.1.2.9 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GDI | 0.51 | 43.0 | 2.78e-01 | 93.8% | 18.5% |
| 4244412 | 11.1.1.929 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28202 | 0.51 | 35.0 | 2.67e-01 | 70.8% | 56.2% |
| 5053043 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.51 | 41.0 | 3.31e-01 | 90.8% | 77.7% |
| 3666982 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 36.0 | 3.33e-01 | 83.1% | 54.7% |
| 3186184 | 270.1.1.0 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related | 0.50 | 38.0 | 2.95e-01 | 84.6% | 86.3% |