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MN234213.1__QFG13052.1__PBI_SCHIEBS_24__00024
Bact-VirMN234213.1__QFG13052.1__PBI_SCHIEBS_24__00024
Identity
- Accession:
- MN234213 ↗
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-41
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.84 | 68.0 | 5.68e-01 | 100.0% | 52.1% |
| 3nuhB02 | 3.30.300.370 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.76 | 53.0 | 3.73e-01 | 82.5% | 24.0% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.70 | 56.0 | 4.56e-01 | 100.0% | 49.4% |
| 3c6mC01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.68 | 55.0 | 5.46e-01 | 100.0% | 90.9% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.66 | 52.0 | 5.02e-01 | 100.0% | 84.0% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.64 | 47.0 | 3.42e-01 | 87.5% | 47.1% |
| 2pw9C03 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.63 | 47.0 | 3.54e-01 | 100.0% | 31.9% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.63 | 49.0 | 4.42e-01 | 100.0% | 62.3% |
| 3n6xA03 | 3.30.1490.270 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.62 | 44.0 | 3.97e-01 | 75.0% | 89.3% |
| 4dxaB01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 53.0 | 4.05e-01 | 100.0% | 45.4% |
| 1pzxA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.62 | 45.0 | 4.62e-01 | 100.0% | 94.3% |
| 3zq5A03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.60 | 45.0 | 3.16e-01 | 85.0% | 41.2% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.60 | 43.0 | 3.53e-01 | 100.0% | 37.9% |
| 5wfiA01 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 48.0 | 3.55e-01 | 100.0% | 42.1% |
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 44.0 | 3.12e-01 | 95.0% | 59.5% |
| 3fdjA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.58 | 44.0 | 4.51e-01 | 100.0% | 89.5% |
| 6cngA02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.58 | 43.0 | 4.40e-01 | 100.0% | 89.5% |
| 3daoA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.58 | 42.0 | 3.30e-01 | 90.0% | 89.9% |
| 2llzA01 | 3.30.70.2360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 45.0 | 3.74e-01 | 100.0% | 85.6% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.57 | 43.0 | 3.34e-01 | 95.0% | 73.2% |
| 3lcyA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 41.0 | 3.23e-01 | 85.0% | 37.4% |
| 2uwqA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 41.0 | 3.43e-01 | 100.0% | 44.2% |
| 1rkqA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.54 | 38.0 | 3.02e-01 | 85.0% | 91.6% |
| 1kg1A02 | 2.30.30.460 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 38.0 | 3.96e-01 | 95.0% | 100.0% |
| 3jr7A02 | 2.20.28.50 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › DegV, N-terminal domain, peripheral subdomain | 0.53 | 38.0 | 3.91e-01 | 95.0% | 92.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3595127 | 304.5.1.0 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like | 0.94 | 86.0 | 7.00e-01 | 100.0% | 94.3% |
| 4991908 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.81 | 71.0 | 5.63e-01 | 100.0% | 80.0% |
| 4331897 | 235.1.1.41 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › TraH_2 | 0.79 | 66.0 | 4.45e-01 | 100.0% | 25.3% |
| 5077636 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.79 | 67.0 | 5.42e-01 | 100.0% | 77.5% |
| 5076080 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.79 | 67.0 | 5.41e-01 | 100.0% | 80.0% |
| 3964707 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.73 | 57.0 | 3.58e-01 | 100.0% | 15.7% |
| 3738248 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.70 | 52.0 | 4.36e-01 | 100.0% | 45.3% |
| 3862518 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.69 | 58.0 | 5.22e-01 | 100.0% | 69.1% |
| 4063438 | 304.18.1.1 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS › FDX-ACB | 0.66 | 51.0 | 4.14e-01 | 97.5% | 93.5% |
| 4947413 | 304.163.1.0 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain | 0.66 | 53.0 | 4.75e-01 | 100.0% | 95.4% |
| 3375945 | 109.4.1.619 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DYW_deaminase | 0.65 | 52.0 | 3.95e-01 | 100.0% | 60.0% |
| 150016 | 221.1.1.113 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 | 0.62 | 53.0 | 4.06e-01 | 100.0% | 45.8% |
| 3258524 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.62 | 53.0 | 3.31e-01 | 100.0% | 53.6% |
| 3699329 | 70.3.1.1 ↗ | beta barrels › beta-clip › SET domain-like › SET domain-like › SET | 0.62 | 46.0 | 2.67e-01 | 80.0% | 67.9% |
| 5080205 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.61 | 50.0 | 4.79e-01 | 100.0% | 84.0% |
| 3875549 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.61 | 51.0 | 3.33e-01 | 100.0% | 19.5% |
| 4645961 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.60 | 44.0 | 2.88e-01 | 82.5% | 22.6% |
| 3258276 | 4081.1.1.2 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › VIT | 0.60 | 51.0 | 3.22e-01 | 100.0% | 16.9% |
| 3494105 | 221.1.1.64 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › Formin_GBD_N | 0.60 | 48.0 | 4.04e-01 | 100.0% | 50.0% |
| 4956027 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.57 | 51.0 | 3.02e-01 | 100.0% | 54.5% |
| 3399432 | 382.1.1.14 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › DUF753 | 0.55 | 43.0 | 3.58e-01 | 100.0% | 47.5% |
| 164929 | 221.1.1.74 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ASPP2-like_RA | 0.54 | 41.0 | 3.43e-01 | 100.0% | 44.2% |