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MN234216.1__QFG13217.1__SEA_GILGAMESH_25__00025

Bact-Vir

MN234216.1__QFG13217.1__SEA_GILGAMESH_25__00025

Identity

Accession:
MN234216 ↗
Kingdom:
phage

Quality

66.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-78
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 68.0 5.41e-01 100.0% 50.0%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 64.0 5.02e-01 100.0% 45.4%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 6.27e-01 100.0% 81.0%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 65.0 5.18e-01 100.0% 48.9%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 65.0 5.21e-01 100.0% 49.3%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 65.0 5.65e-01 100.0% 63.3%
3qphA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 55.0 4.97e-01 97.3% 59.8%
2hr3D02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 56.0 5.96e-01 87.7% 95.2%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 65.0 6.08e-01 100.0% 79.8%
4kmfA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 5.84e-01 87.7% 93.5%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 66.0 6.05e-01 100.0% 79.6%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 65.0 6.29e-01 100.0% 92.6%
2co5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 65.0 6.04e-01 100.0% 81.5%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 65.0 6.19e-01 100.0% 88.1%
5bpdD01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.26e-01 87.7% 77.3%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 64.0 5.67e-01 100.0% 71.3%
1xmkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 5.81e-01 100.0% 87.3%
3j7aY00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 64.0 4.92e-01 100.0% 52.6%
5tjjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.71e-01 100.0% 90.4%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 6.05e-01 100.0% 97.2%
4ad9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.34e-01 89.0% 83.3%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 5.35e-01 100.0% 71.4%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 57.0 5.27e-01 100.0% 74.2%
1jhfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.64e-01 89.0% 94.2%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 5.51e-01 100.0% 84.4%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 54.0 5.25e-01 89.0% 80.5%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 57.0 5.36e-01 100.0% 78.9%
1oyiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 5.17e-01 89.0% 98.4%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 5.18e-01 89.0% 86.7%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 55.0 4.93e-01 97.3% 70.3%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 47.0 3.51e-01 79.5% 75.3%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 49.0 4.91e-01 94.5% 84.2%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.95e-01 89.0% 86.3%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.59 49.0 4.47e-01 93.2% 90.8%
3jtgA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.52e-01 90.4% 100.0%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.58 45.0 3.98e-01 89.0% 86.4%
1k78B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 4.38e-01 100.0% 86.3%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 31.0 2.74e-01 91.8% 36.7%
3fleA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 41.0 2.89e-01 80.8% 70.4%
3d31A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 31.0 3.56e-01 82.2% 84.8%
ECOD (64)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4975635 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.79 61.0 4.44e-01 100.0% 31.6%
3285732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 68.0 5.39e-01 100.0% 49.3%
3483774 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 59.0 5.75e-01 89.0% 73.8%
5023037 101.1.2.92 alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.76 65.0 6.18e-01 100.0% 78.8%
4993553 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 67.0 6.32e-01 100.0% 81.2%
5030617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 67.0 5.98e-01 100.0% 71.0%
168574 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.75 65.0 5.65e-01 100.0% 63.3%
3603567 101.1.2.32 alpha arrays › HTH › HTH › winged helix domain › Rrf2 0.74 61.0 6.27e-01 100.0% 92.9%
4928656 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 69.0 5.73e-01 100.0% 78.3%
4976528 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 68.0 4.92e-01 100.0% 41.6%
5000330 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.74 65.0 6.37e-01 100.0% 88.7%
5073351 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.74 66.0 5.76e-01 100.0% 67.6%
3932421 101.1.2.383 alpha arrays › HTH › HTH › winged helix domain › HTH_69 0.73 57.0 5.87e-01 89.0% 87.1%
4979317 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.73 65.0 6.20e-01 100.0% 83.5%
5039269 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.73 62.0 5.79e-01 100.0% 74.4%
3236192 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 58.0 6.12e-01 93.2% 93.8%
2701 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.73 65.0 6.08e-01 100.0% 79.8%
5040773 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.73 61.0 5.60e-01 98.6% 70.5%
4929213 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 66.0 5.58e-01 100.0% 65.0%
4933851 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.73 61.0 6.10e-01 93.2% 88.0%
5053499 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 5.71e-01 100.0% 72.3%
4982701 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.72 65.0 6.15e-01 100.0% 83.5%
3934218 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.72 54.0 4.27e-01 100.0% 40.7%
3840296 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 61.0 5.13e-01 89.0% 59.1%
4926820 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.72 60.0 5.57e-01 100.0% 72.2%
5038637 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.72 56.0 5.74e-01 94.5% 85.7%
4100982 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.72 53.0 5.17e-01 100.0% 71.2%
4990436 101.1.2.109 alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.72 60.0 5.98e-01 93.2% 88.0%
4986964 101.1.2.46 alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.72 66.0 6.24e-01 100.0% 85.9%
4230066 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.71 65.0 6.04e-01 100.0% 81.1%
3785188 101.1.2.183 alpha arrays › HTH › HTH › winged helix domain › MUS81-like_WH 0.71 65.0 5.72e-01 100.0% 81.0%
4524873 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.71 65.0 6.05e-01 100.0% 91.0%
2843369 101.1.2.32 alpha arrays › HTH › HTH › winged helix domain › Rrf2 0.71 65.0 5.15e-01 100.0% 84.7%
4034017 101.1.2.32 alpha arrays › HTH › HTH › winged helix domain › Rrf2 0.71 62.0 5.81e-01 100.0% 77.8%
4928633 101.1.2.18 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S19e 0.71 66.0 5.76e-01 100.0% 76.2%
4955139 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 57.0 5.96e-01 97.3% 96.9%
4996621 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 64.0 5.73e-01 100.0% 77.0%
3277691 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.70 60.0 5.72e-01 100.0% 80.0%
4929103 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.70 60.0 5.45e-01 100.0% 70.0%
4559677 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 57.0 5.80e-01 87.7% 92.9%
3184109 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.69 63.0 5.31e-01 100.0% 80.0%
5068452 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.69 59.0 5.64e-01 100.0% 80.0%
3548337 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.29e-01 94.5% 81.0%
3507701 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.68 60.0 5.15e-01 100.0% 76.7%
3600167 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 62.0 5.30e-01 100.0% 80.0%
3249801 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.68 56.0 5.14e-01 100.0% 70.5%
4956336 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.68 57.0 5.19e-01 100.0% 69.0%
3713489 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 4.10e-01 90.4% 38.4%
4642259 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.67 56.0 5.24e-01 100.0% 74.4%
4004641 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.67 56.0 5.77e-01 100.0% 97.1%
4339388 101.1.2.27 alpha arrays › HTH › HTH › winged helix domain › LexA_DNA_bind 0.67 54.0 5.71e-01 90.4% 100.0%
4940863 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.28e-01 100.0% 79.5%
5049563 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.66 50.0 2.98e-01 90.4% 10.9%
4955319 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 58.0 5.75e-01 100.0% 97.3%
4085907 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.64 55.0 3.60e-01 100.0% 22.6%
3972090 101.1.2.668 alpha arrays › HTH › HTH › winged helix domain › PF28010 0.63 55.0 5.31e-01 100.0% 89.4%
3251327 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 38.0 4.33e-01 87.7% 83.6%
3487127 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 53.0 4.73e-01 100.0% 88.6%
4929288 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 45.0 4.23e-01 82.2% 100.0%
5050915 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 51.0 3.34e-01 100.0% 51.6%
3183589 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.57 50.0 4.81e-01 98.6% 90.6%
4029219 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 45.0 3.26e-01 100.0% 37.3%
3615110 325.1.7.4 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › GCV_H 0.51 41.0 3.52e-01 90.4% 79.7%
5073740 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.51 38.0 2.80e-01 80.8% 78.1%
D2 high residues 108-189
PDB