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MN234216.1__QFG13223.1__SEA_GILGAMESH_31__00031

Bact-Vir

MN234216.1__QFG13223.1__SEA_GILGAMESH_31__00031

Identity

Accession:
MN234216 ↗
Kingdom:
phage

Quality

83.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gilgameshvirus› Streptomyces_phage_Gilgamesh

TaxID: 2599890

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-39_71-93
PDB
Domain cluster: representative
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4013235 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.60 39.0 3.99e-01 100.0% 69.1%
D2 medium residues 40-70_94-122
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4j0xA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.66 49.0 3.01e-01 80.0% 96.7%
1pg5B02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.63 45.0 4.64e-01 75.0% 93.0%
2cmzA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.63 49.0 4.32e-01 88.3% 80.6%
2atcB02 2.30.30.20 Mainly Beta › Roll › SH3 type barrels. › Aspartate carbamoyltransferase regulatory subunit, C-terminal domain 0.62 45.0 4.73e-01 76.7% 96.2%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 45.0 2.90e-01 81.7% 26.3%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.61 34.0 3.71e-01 73.3% 64.0%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.60 39.0 3.70e-01 73.3% 54.2%
1twfI01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 39.0 4.31e-01 86.7% 87.0%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 32.0 3.99e-01 78.3% 97.0%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.57 36.0 3.41e-01 88.3% 52.0%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.33e-01 86.7% 86.2%
8gq6A01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.56 38.0 2.54e-01 73.3% 43.1%
2jn4A00 2.40.50.240 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NifT/FixU-like 0.55 43.0 4.27e-01 93.3% 84.8%
1qf8A02 2.20.25.20 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 38.0 3.59e-01 81.7% 61.1%
3ottA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.86e-01 91.7% 92.0%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.11e-01 80.0% 64.7%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 44.0 2.72e-01 100.0% 41.3%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 34.0 3.83e-01 75.0% 100.0%
2gtiA01 3.30.160.820 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like 0.52 40.0 3.97e-01 86.7% 90.6%
2zyrA02 2.60.40.2190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.64e-01 90.0% 86.2%
1pz4A00 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.52 35.0 2.99e-01 100.0% 38.9%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.51 38.0 2.68e-01 91.7% 88.6%
2nutB02 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.51 39.0 3.90e-01 85.0% 95.2%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4438701 375.1.1.272 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF26372 0.69 43.0 4.72e-01 76.7% 77.6%
3482645 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.68 40.0 4.89e-01 78.3% 100.0%
4947252 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 42.0 4.67e-01 86.7% 86.7%
4989647 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.66 43.0 4.52e-01 90.0% 74.5%
5051764 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.65 46.0 3.44e-01 76.7% 31.6%
4932308 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.65 38.0 4.47e-01 76.7% 100.0%
4932814 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.65 38.0 4.54e-01 83.3% 100.0%
5044272 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.64 42.0 4.47e-01 86.7% 80.0%
3704121 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.64 44.0 4.48e-01 90.0% 74.1%
5031337 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.63 40.0 4.53e-01 81.7% 97.4%
3907533 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.62 38.0 4.39e-01 81.7% 92.5%
3819668 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.62 39.0 4.29e-01 83.3% 86.4%
4278890 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.62 37.0 4.24e-01 78.3% 100.0%
3400892 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.62 36.0 4.16e-01 76.7% 85.0%
4955965 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.62 39.0 4.24e-01 86.7% 78.0%
3595832 375.8.1.0 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta 0.61 39.0 4.11e-01 83.3% 72.7%
5047657 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 44.0 4.57e-01 76.7% 89.1%
4989457 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 40.0 4.30e-01 85.0% 84.0%
8012 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.60 39.0 4.23e-01 86.7% 81.6%
5026901 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 42.0 4.22e-01 75.0% 76.7%
3507112 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 36.0 3.92e-01 76.7% 72.0%
3601907 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.60 39.0 2.78e-01 71.7% 22.3%
3312712 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.60 36.0 3.94e-01 76.7% 74.0%
3177549 375.1.1.30 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-Sec23_Sec24 0.59 42.0 4.25e-01 95.0% 76.7%
3662922 375.1.1.148 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RPA_interact_C 0.59 41.0 4.39e-01 78.3% 90.0%
4276264 375.8.1.5 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › PF26372 0.58 36.0 3.86e-01 73.3% 80.0%
3523834 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.58 41.0 2.60e-01 76.7% 39.2%
3244797 64.1.1.1 ↗ beta meanders › WW domain-like › WW domain › WW domain › WW 0.57 38.0 3.56e-01 83.3% 54.7%
2722273 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.57 37.0 3.79e-01 88.3% 69.0%
4279904 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.56 47.0 3.05e-01 93.3% 32.7%
4591471 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.56 40.0 4.09e-01 76.7% 83.6%
5055373 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.56 45.0 3.68e-01 90.0% 62.6%
3612107 375.8.1.1 ↗ few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta › eIF-5_eIF-2B 0.56 39.0 3.90e-01 85.0% 73.3%
3874321 389.1.2.7 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › THBD 0.55 44.0 4.17e-01 86.7% 84.3%
2507075 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.55 43.0 3.85e-01 85.0% 98.8%
4944460 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.54 41.0 2.71e-01 81.7% 65.3%
3592215 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.54 34.0 3.63e-01 93.3% 73.6%
2323841 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 38.0 2.41e-01 78.3% 13.2%
4014320 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 2.92e-01 81.7% 72.7%
3477576 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.53 32.0 3.47e-01 90.0% 77.8%
4961041 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 41.0 3.82e-01 88.3% 87.5%
5081649 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 42.0 3.96e-01 88.3% 89.3%
4942956 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.52 38.0 4.02e-01 95.0% 94.0%
3597501 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 41.0 3.99e-01 95.0% 80.0%