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MN234216.1__QFG13241.1__SEA_GILGAMESH_49__00049

Bact-Vir

MN234216.1__QFG13241.1__SEA_GILGAMESH_49__00049

Identity

Accession:
MN234216 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gilgameshvirus› Streptomyces_phage_Gilgamesh

TaxID: 2599890

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-78
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gr5C01 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.62 29.0 3.18e-01 100.0% 51.6%
3fqmA01 2.20.25.210 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B 0.58 36.0 3.93e-01 100.0% 78.7%
2hl7A00 1.10.8.640 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Cytochrome C biogenesis protein 0.53 39.0 3.86e-01 100.0% 74.4%
1lmiA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 44.0 3.77e-01 100.0% 92.4%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.51 32.0 3.33e-01 98.7% 67.6%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
682 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.54 33.0 3.16e-01 100.0% 49.5%
5052301 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.52 41.0 3.35e-01 100.0% 45.5%
3658083 2.9.1.1 ↗ beta barrels › OB-fold › RNB domain-like › RNB domain-like › RNB 0.52 42.0 2.75e-01 92.2% 85.5%
3408327 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 31.0 3.01e-01 98.7% 52.2%
4580772 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.50 30.0 2.99e-01 98.7% 54.1%