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MN234216.1__QFG13243.1__SEA_GILGAMESH_51__00051

Bact-Vir

MN234216.1__QFG13243.1__SEA_GILGAMESH_51__00051

Identity

Accession:
MN234216 ↗
Kingdom:
phage

Quality

82.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-60
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mq1A01 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 55.0 4.60e-01 75.0% 52.2%
4p9tA01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.77 55.0 4.20e-01 75.0% 40.0%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.76 55.0 4.24e-01 76.8% 44.3%
1lrzA03 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 54.0 5.24e-01 75.0% 80.6%
1xeqB00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.76 55.0 4.74e-01 76.8% 55.3%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.75 53.0 5.21e-01 75.0% 77.0%
4fzsA00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.74 53.0 3.54e-01 75.0% 32.5%
1c5aA00 1.20.91.20 Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) 0.74 64.0 6.15e-01 98.2% 83.1%
3bg2A03 1.10.3410.10 Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain 0.74 53.0 4.33e-01 75.0% 58.3%
4w4kA00 1.10.287.850 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain 0.73 52.0 4.53e-01 75.0% 51.2%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.72 51.0 4.19e-01 75.0% 48.0%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.72 51.0 4.30e-01 75.0% 69.6%
3u3iA02 1.20.58.1110 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 61.0 4.95e-01 100.0% 74.1%
2lfrA00 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.70 53.0 4.28e-01 89.3% 42.3%
5yszA03 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 54.0 4.09e-01 91.1% 35.3%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 58.0 4.91e-01 100.0% 89.1%
1wdhA02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.68 46.0 3.74e-01 73.2% 38.2%
3frwB00 1.10.1270.10 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like 0.68 50.0 4.25e-01 98.2% 46.9%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.68 55.0 4.13e-01 89.3% 68.9%
4o8sA02 1.20.58.1790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › JHP933, helical tail domain 0.67 59.0 4.77e-01 98.2% 70.1%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.67 47.0 5.17e-01 75.0% 93.3%
1vjxA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.66 56.0 4.10e-01 94.6% 70.5%
4gltA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 49.0 3.84e-01 78.6% 41.2%
2aswA00 1.10.8.500 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › HAMP domain in histidine kinase 0.65 47.0 4.77e-01 83.9% 78.6%
1w0bA01 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.65 57.0 4.88e-01 100.0% 91.3%
3fnrA01 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.65 56.0 4.20e-01 98.2% 92.4%
4gouA03 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.65 45.0 3.14e-01 75.0% 30.5%
1pd3A00 1.10.287.230 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 45.0 4.57e-01 75.0% 75.9%
1zhxA02 1.10.287.2720 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.65 46.0 4.03e-01 76.8% 60.9%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.64 47.0 4.03e-01 78.6% 55.6%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.64 51.0 3.45e-01 91.1% 63.1%
4fcyA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 49.0 4.38e-01 83.9% 60.3%
1urjA03 1.10.150.560 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.62 52.0 4.68e-01 98.2% 65.9%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.62 52.0 4.16e-01 96.4% 66.7%
6s21B01 3.40.720.10 Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A 0.61 54.0 3.28e-01 100.0% 71.0%
3m1mA03 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.61 52.0 4.26e-01 100.0% 57.3%
1uaaA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 48.0 4.54e-01 100.0% 71.6%
5hyhA00 1.10.620.20 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A 0.60 54.0 3.41e-01 100.0% 35.9%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.60 51.0 4.36e-01 96.4% 86.0%
6me6B02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.60 43.0 2.82e-01 80.4% 17.1%
3nvoB02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.60 52.0 4.14e-01 100.0% 81.9%
1b04A03 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.59 43.0 4.18e-01 76.8% 74.2%
4dkcB00 1.20.1250.80 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-34 0.58 48.0 3.51e-01 92.9% 58.7%
1rv2D04 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.58 43.0 3.99e-01 87.5% 64.3%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 50.0 3.67e-01 100.0% 61.2%
4qhpA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.56 45.0 2.91e-01 98.2% 35.5%
2xvlA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 47.0 2.88e-01 100.0% 15.1%
1wcrA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.56 50.0 4.08e-01 100.0% 86.4%
7vwtA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.55 47.0 2.96e-01 94.6% 28.6%
3h37A03 1.20.58.1960 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 40.0 3.20e-01 87.5% 35.9%
2zgyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.41e-01 92.9% 40.7%
4c2uA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.54 44.0 4.05e-01 100.0% 67.9%
1e7uA05 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.52 43.0 3.14e-01 100.0% 63.9%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 41.0 3.73e-01 94.6% 78.0%
2qkdA04 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.50 38.0 3.04e-01 85.7% 48.0%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3213789 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.85 73.0 7.44e-01 100.0% 94.5%
3581419 6028.1.1.0 alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor 0.85 58.0 6.77e-01 83.9% 100.0%
3542362 389.1.1.127 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › ANATO 0.84 69.0 7.30e-01 94.6% 100.0%
3833252 4106.1.1.0 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack 0.76 52.0 3.82e-01 71.4% 31.7%
5009682 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.75 54.0 4.13e-01 75.0% 40.8%
4238557 1188.1.1.3 alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Mntp 0.75 63.0 4.38e-01 92.9% 48.3%
3400483 141.1.1.27 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Tmp39 0.74 52.0 3.19e-01 73.2% 16.1%
3355429 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.74 53.0 5.01e-01 75.0% 70.8%
3952753 150.7.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE 0.73 52.0 4.70e-01 75.0% 56.0%
56798 150.7.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE 0.73 52.0 4.67e-01 75.0% 55.3%
3477962 159.1.2.0 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.73 52.0 4.40e-01 75.0% 52.2%
4441096 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 58.0 5.71e-01 100.0% 85.0%
3607309 1189.1.1.2 alpha bundles › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG (variant surface glycoprotein) N-terminal domain and haptoglobin-hemoglobin receptor › VSG_B 0.71 50.0 3.07e-01 75.0% 27.0%
3957138 150.7.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE 0.71 50.0 4.37e-01 75.0% 50.6%
4020871 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.69 50.0 3.79e-01 76.8% 39.2%
3267351 5001.1.1.32 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Solute_trans_a 0.68 48.0 3.01e-01 75.0% 14.8%
3794663 604.3.1.27 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › EMC4 0.68 59.0 4.83e-01 96.4% 87.0%
4312324 605.1.1.306 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › PF30649 0.67 51.0 4.58e-01 80.4% 72.0%
3250170 3614.1.1.0 alpha arrays › T4 RNA ligase › T4 RNA ligase › T4 RNA ligase (Rnl1) C-terminal domain 0.67 54.0 4.09e-01 91.1% 37.9%
4188764 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.66 57.0 4.51e-01 98.2% 79.2%
3894828 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.66 59.0 4.34e-01 100.0% 51.0%
5026278 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.66 56.0 3.86e-01 100.0% 69.8%
3176758 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 55.0 3.33e-01 98.2% 45.5%
3886341 4207.1.2.74 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › PF27654 0.65 47.0 3.53e-01 100.0% 34.4%
3833049 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.64 55.0 3.62e-01 94.6% 32.4%
3812592 109.4.1.1948 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle 0.64 55.0 4.00e-01 96.4% 42.5%
4020549 197.1.1.3 alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP 0.64 51.0 4.39e-01 98.2% 53.0%
3199801 5001.1.1.144 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Choline_transpo 0.64 55.0 3.34e-01 100.0% 87.2%
3172236 604.5.1.31 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › TRAM_LAG1_CLN8 0.63 57.0 3.67e-01 100.0% 50.6%
4247735 2008.1.1.59 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 0.63 56.0 3.09e-01 100.0% 7.8%
4215142 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.63 54.0 4.26e-01 100.0% 45.6%
4044288 4207.1.1.6 alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › Med10 0.63 46.0 3.56e-01 78.6% 35.2%
3248284 622.4.1.0 alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.63 53.0 4.37e-01 96.4% 81.9%
3471396 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.63 50.0 4.24e-01 89.3% 84.2%
3184140 5086.1.1.87 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.62 47.0 3.62e-01 80.4% 67.8%
3452001 633.22.1.0 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.61 54.0 3.75e-01 100.0% 42.7%
4857248 5064.1.1.1 alpha bundles › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › Photosystem I reaction center subunit XI, PsaL › PsaL 0.60 47.0 3.87e-01 100.0% 79.7%
4334590 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.59 50.0 3.22e-01 100.0% 50.3%
3881396 186.1.1.13 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › QRICH1 0.59 49.0 3.98e-01 96.4% 60.9%
3507024 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.59 51.0 3.24e-01 100.0% 54.7%
3734312 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.58 52.0 3.46e-01 100.0% 75.3%
3935599 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.57 49.0 3.42e-01 100.0% 40.0%
3789184 7015.1.1.0 alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.57 49.0 3.82e-01 100.0% 76.9%
4649431 3524.1.1.2 alpha arrays › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage › Uncharacterized protein encoded by cryptic prophage › PF29794 0.57 40.0 3.35e-01 73.2% 85.9%
3704940 320.4.1.3 a+b two layers › R3H domain-like › PUB domain › PUB domain › PUB 0.54 46.0 3.66e-01 98.2% 63.3%
4001585 371.1.1.1 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholip_A2_1 0.52 42.0 3.49e-01 87.5% 50.0%
1668933 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.52 43.0 3.71e-01 98.2% 79.6%
3960460 620.1.1.0 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases 0.52 46.0 3.39e-01 98.2% 91.4%
3289996 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.50 41.0 3.13e-01 91.1% 85.9%
3286007 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.50 42.0 2.73e-01 92.9% 20.8%