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MN234216.1__QFG13252.1__SEA_GILGAMESH_60__00060

Bact-Vir

MN234216.1__QFG13252.1__SEA_GILGAMESH_60__00060

Identity

Accession:
MN234216 ↗
Kingdom:
phage

Quality

90.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 44-110
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.75 67.0 5.97e-01 98.5% 81.1%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.71 52.0 5.14e-01 98.5% 73.2%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.70 61.0 4.66e-01 100.0% 82.7%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 47.0 4.74e-01 73.1% 68.1%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 52.0 5.19e-01 97.0% 79.7%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 4.38e-01 100.0% 69.3%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 58.0 4.54e-01 97.0% 68.7%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.66 58.0 5.07e-01 98.5% 73.5%
5dj7A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.66 57.0 4.87e-01 97.0% 65.7%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.65 56.0 4.35e-01 95.5% 49.0%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 54.0 4.52e-01 98.5% 65.3%
6r2wH02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 52.0 4.54e-01 97.0% 67.3%
5f8zA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 53.0 4.53e-01 97.0% 66.1%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.62 51.0 4.28e-01 95.5% 94.4%
1go3E02 3.30.1490.120 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RNA polymerase Rpb7-like, N-terminal domain 0.62 47.0 4.52e-01 85.1% 91.4%
1vs3A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.61 46.0 3.66e-01 82.1% 61.8%
1fiwA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 51.0 4.35e-01 98.5% 67.5%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 51.0 4.57e-01 97.0% 79.2%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 52.0 4.60e-01 100.0% 75.8%
4qjvB00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.59 50.0 4.49e-01 94.0% 72.3%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 40.0 4.29e-01 95.5% 83.9%
1h4uA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.58 49.0 3.39e-01 95.5% 87.3%
3ofkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.58 48.0 3.41e-01 91.0% 73.0%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 50.0 4.59e-01 100.0% 97.8%
4j37A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.58 43.0 3.20e-01 82.1% 49.5%
5svgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 44.0 3.69e-01 83.6% 95.9%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.57 44.0 4.26e-01 88.1% 77.2%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 43.0 4.08e-01 80.6% 71.2%
1zyoA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 47.0 4.46e-01 97.0% 78.3%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.56 41.0 3.97e-01 85.1% 69.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.56 47.0 3.44e-01 100.0% 49.0%
1ciyA02 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.56 41.0 3.09e-01 83.6% 99.0%
4o2zA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 47.0 3.66e-01 97.0% 49.7%
1ao8A00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.55 45.0 3.44e-01 91.0% 99.4%
2w9hA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.55 44.0 3.41e-01 89.6% 98.7%
3h7lA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.20e-01 100.0% 95.7%
4j27A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 46.0 4.20e-01 95.5% 86.5%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 43.0 3.91e-01 86.6% 66.3%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.50e-01 98.5% 90.3%
2bzgA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 3.06e-01 94.0% 77.7%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.52 40.0 3.20e-01 86.6% 53.0%
4i6yA02 3.30.70.420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain 0.52 39.0 3.47e-01 86.6% 67.3%
8gccA02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.52 43.0 4.03e-01 98.5% 75.6%
1h6qA00 2.170.150.10 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A 0.51 43.0 3.25e-01 95.5% 88.1%
3io1A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.41e-01 89.6% 96.6%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 42.0 4.06e-01 95.5% 91.0%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4077367 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.75 52.0 5.28e-01 73.1% 73.8%
4981269 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 65.0 5.83e-01 98.5% 78.9%
5003311 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 62.0 5.28e-01 92.5% 71.8%
4931265 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 64.0 5.29e-01 98.5% 83.3%
4407090 1.1.7.89 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 0.70 61.0 4.78e-01 98.5% 52.4%
3164699 1.1.13.33 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N 0.69 57.0 4.87e-01 94.0% 89.6%
4033372 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 56.0 4.81e-01 91.0% 68.2%
3969448 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 56.0 4.92e-01 92.5% 95.2%
5079927 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 61.0 5.53e-01 98.5% 81.1%
3967199 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 60.0 5.21e-01 100.0% 76.2%
4014778 1.1.5.10 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.68 59.0 4.09e-01 100.0% 77.9%
5022644 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.67 56.0 5.01e-01 92.5% 67.4%
5007131 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.67 57.0 5.19e-01 100.0% 83.2%
3408679 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 57.0 3.94e-01 97.0% 31.3%
4587424 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.66 56.0 3.96e-01 97.0% 31.4%
4989942 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 55.0 5.00e-01 92.5% 72.2%
3187986 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.65 54.0 4.68e-01 92.5% 59.0%
164720 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 56.0 4.35e-01 95.5% 49.0%
5080510 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.65 50.0 4.56e-01 86.6% 67.4%
3789214 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.65 56.0 4.93e-01 100.0% 72.4%
4957562 1.1.13.76 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF6046 0.65 53.0 4.61e-01 94.0% 88.2%
5057186 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 56.0 5.17e-01 100.0% 80.0%
4982501 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 56.0 5.05e-01 100.0% 78.9%
3943282 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 55.0 4.63e-01 100.0% 67.5%
4513514 325.1.7.2 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.64 46.0 3.86e-01 79.1% 100.0%
4059301 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.64 52.0 4.52e-01 94.0% 85.5%
3587074 1.1.13.17 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N 0.63 53.0 4.64e-01 98.5% 79.1%
5040464 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 53.0 4.88e-01 100.0% 81.1%
3412875 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.63 50.0 4.38e-01 89.6% 94.3%
4287081 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.63 54.0 4.46e-01 100.0% 64.0%
3927746 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 49.0 3.93e-01 86.6% 51.1%
4191050 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 48.0 4.05e-01 85.1% 98.3%
4030357 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.62 51.0 4.72e-01 98.5% 71.1%
4189243 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.60 52.0 4.25e-01 98.5% 61.5%
2391814 1.1.9.4 beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA 0.60 50.0 3.84e-01 95.5% 62.0%
4029744 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.60 47.0 3.76e-01 88.1% 75.9%
3726353 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.60 52.0 3.42e-01 98.5% 60.3%
2832216 1.1.5.24 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.60 51.0 4.00e-01 98.5% 79.7%
5079843 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 41.0 4.17e-01 70.1% 72.3%
3678951 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.60 46.0 3.29e-01 88.1% 57.0%
3208996 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.60 52.0 3.49e-01 98.5% 65.0%
3801974 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.59 46.0 4.04e-01 89.6% 95.5%
4316388 309.1.2.0 a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain 0.59 50.0 3.96e-01 98.5% 86.0%
3476907 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 51.0 3.34e-01 100.0% 42.5%
3173192 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.59 48.0 3.08e-01 91.0% 28.5%
4129680 1.1.7.50 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.59 49.0 4.16e-01 92.5% 62.7%
3602774 304.51.1.8 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C 0.59 44.0 3.78e-01 83.6% 74.8%
3598222 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.09e-01 74.6% 100.0%
3807657 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.57 44.0 3.07e-01 86.6% 54.8%
3942433 256.1.1.4 a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like › DUF4177 0.57 42.0 4.34e-01 80.6% 100.0%
3710599 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.57 43.0 3.00e-01 86.6% 37.8%
3428351 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.57 46.0 3.41e-01 92.5% 47.2%
3595076 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.57 46.0 3.16e-01 92.5% 35.6%
3185641 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.56 43.0 3.59e-01 85.1% 72.0%
5036913 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 42.0 3.91e-01 100.0% 62.2%
4169040 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.56 43.0 3.88e-01 86.6% 58.9%
3914097 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 47.0 3.09e-01 100.0% 40.6%
3946057 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.55 44.0 3.24e-01 95.5% 65.5%
3585584 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 46.0 2.94e-01 100.0% 34.1%
4124706 76.1.1.1 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Endotoxin_M 0.54 41.0 3.08e-01 86.6% 98.9%
3485387 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 34.0 3.35e-01 70.1% 58.7%
3743321 304.102.1.3 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 0.53 43.0 2.90e-01 95.5% 46.8%
2674741 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.52 33.0 3.57e-01 70.1% 78.2%
2580403 7501.1.1.1 a/b three-layered sandwiches › Dihydrofolate reductases › Dihydrofolate reductases › Dihydrofolate reductases › DHFR_1 0.52 42.0 3.19e-01 92.5% 73.1%
4235653 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.51 40.0 3.76e-01 88.1% 96.5%
4246284 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.51 41.0 3.03e-01 98.5% 83.1%
3521712 109.6.1.1 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF 0.50 41.0 2.67e-01 94.0% 19.4%