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MN234216.1QFG13290.1SEA_GILGAMESH_98__00098

Bact-Vir

MN234216.1__QFG13290.1__SEA_GILGAMESH_98__00098

Identity

Accession:: MN234216 ↗
Kingdom:: phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gilgameshvirus› Streptomyces_phage_Gilgamesh

TaxID: 2599890

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 13-115

PDB

Domain cluster: representative

CATH (22)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1y9qA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.86	53.0	5.81e-01	90.3%	75.3%
3qf3D00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.85	72.0	6.65e-01	100.0%	72.7%
3zhiA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.84	56.0	6.62e-01	84.5%	95.9%
1r69A00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.84	50.0	6.25e-01	85.4%	98.4%
2ofyA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.83	49.0	5.81e-01	81.6%	85.7%
2awiA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.81	49.0	5.92e-01	85.4%	92.5%
2bnmA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.80	49.0	5.68e-01	85.4%	85.1%
7zcvA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.79	48.0	5.93e-01	89.3%	100.0%
8dtqA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.78	49.0	5.45e-01	89.3%	80.5%
3b7hA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.77	48.0	5.45e-01	86.4%	84.2%
1b0nA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.76	52.0	5.29e-01	94.2%	70.9%
4jcyA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.74	53.0	5.63e-01	91.3%	82.6%
3pxpA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.74	53.0	5.59e-01	80.6%	81.7%
7zviA01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.67	53.0	5.00e-01	82.5%	77.9%
2nsfA01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.64	40.0	3.50e-01	100.0%	40.9%
2da3A01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.60	26.0	3.71e-01	79.6%	87.2%
2bbrA01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.53	34.0	3.61e-01	80.6%	74.2%
1psyA01	1.10.110.10	Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins	0.53	35.0	3.60e-01	97.1%	70.0%
1ashA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	40.0	3.60e-01	81.6%	93.2%
3hyuA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.52	37.0	3.40e-01	74.8%	95.7%
5d0yA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.51	43.0	3.82e-01	93.2%	79.4%
7t2rC01	1.10.10.1590	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E	0.50	26.0	3.34e-01	77.7%	89.5%

ECOD (24)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4585952	101.1.4.17 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26	0.86	55.0	6.65e-01	90.3%	95.7%
4031703	101.1.4.17 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26	0.85	52.0	6.32e-01	86.4%	91.4%
4061717	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.85	54.0	5.39e-01	87.4%	62.9%
4075146	101.1.4.18 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31	0.85	55.0	5.02e-01	82.5%	52.3%
428838	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.84	73.0	6.71e-01	100.0%	72.5%
3278834	101.1.4.3 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3	0.84	52.0	6.28e-01	85.4%	92.9%
3283427	101.1.4.3 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3	0.83	61.0	5.60e-01	91.3%	60.8%
3283172	101.1.4.3 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3	0.82	65.0	4.74e-01	94.2%	33.3%
1185984	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.82	67.0	7.15e-01	98.1%	97.8%
3973014	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.82	47.0	5.79e-01	88.3%	90.8%
4678741	101.1.4.3 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3	0.80	49.0	5.71e-01	82.5%	85.3%
3283003	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.78	59.0	6.13e-01	89.3%	83.7%
3059487	101.1.4.3 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3	0.78	49.0	5.34e-01	89.3%	76.7%
3283697	101.1.4.0 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like	0.69	54.0	5.20e-01	81.6%	92.2%
3219558	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.61	29.0	3.38e-01	100.0%	61.3%
3703430	4193.1.1.0 ↗	alpha arrays › RUN domain › RUN domain › RUN domain	0.61	46.0	3.91e-01	80.6%	67.4%
4392993	148.1.3.0 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain	0.57	28.0	3.23e-01	100.0%	61.3%
4929008	186.1.1.0 ↗	alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N	0.54	37.0	3.42e-01	71.8%	81.4%
3483301	4964.1.1.0 ↗	alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I	0.51	44.0	3.90e-01	93.2%	84.7%
3969108	7579.1.1.0 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases	0.50	41.0	2.78e-01	89.3%	45.5%
3249893	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.50	29.0	3.06e-01	93.2%	62.2%
3598243	592.1.1.0 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain	0.50	30.0	3.64e-01	81.6%	93.8%
2605234	3697.1.1.1 ↗	alpha bundles › NQO2 helical bundle domain › NQO2 helical bundle domain › NQO2 helical bundle domain › 2Fe-2S_thioredx	0.50	26.0	3.14e-01	78.6%	76.1%
3984116	102.1.2.1 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase › HhH-GPD	0.50	44.0	3.63e-01	100.0%	71.8%

D2 medium residues 124-163

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fxdA06	1.10.132.60	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain	0.63	52.0	3.50e-01	95.0%	68.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3417070	3826.1.1.0 ↗	alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR)	0.73	62.0	5.22e-01	97.5%	57.1%