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MN234216.1__QFG13296.1__SEA_GILGAMESH_104__00104

Bact-Vir

MN234216.1__QFG13296.1__SEA_GILGAMESH_104__00104

Identity

Accession:
MN234216 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gilgameshvirus› Streptomyces_phage_Gilgamesh

TaxID: 2599890

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 243-296
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mxdA00 1.10.260.110 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.69 50.0 4.84e-01 77.8% 72.6%
4h3vB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 50.0 3.39e-01 100.0% 68.1%
1qsmD00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 41.0 3.00e-01 75.9% 27.0%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.57 39.0 4.07e-01 77.8% 81.2%
2cx6A00 3.30.370.10 Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › Barstar-like 0.56 43.0 3.81e-01 90.7% 89.9%
3b34A05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.52 41.0 2.64e-01 92.6% 28.6%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.52 35.0 3.70e-01 77.8% 81.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4931573 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 41.0 4.02e-01 85.2% 58.3%
3174920 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.64 52.0 4.56e-01 94.4% 60.0%
3314204 206.1.1.74 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.63 43.0 2.65e-01 72.2% 11.4%
3671014 109.4.1.1272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, E_motif 0.62 44.0 2.59e-01 74.1% 21.6%
4971962 5073.1.1.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.60 44.0 2.59e-01 100.0% 9.9%
3186778 103.11.1.1 ↗ alpha arrays › RuvA-C › RMI1 N-terminal helical domain-related › RMI1 N-terminal helical domain-related › RMI1_N_N 0.60 39.0 3.97e-01 77.8% 65.5%
4999125 3281.1.2.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit 8 (Nqo8)-related › NADHdh 0.58 46.0 2.85e-01 90.7% 66.6%
3785560 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.55 42.0 2.86e-01 85.2% 23.3%
3189168 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.54 40.0 3.88e-01 90.7% 70.0%
3243887 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 45.0 3.02e-01 92.6% 43.9%
4025956 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.54 45.0 3.15e-01 100.0% 90.5%
1840998 601.21.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr 0.53 36.0 2.77e-01 72.2% 40.0%
3414822 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.52 39.0 2.95e-01 85.2% 68.0%
5065059 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.51 34.0 3.29e-01 100.0% 58.5%
D2 medium residues 83-230
PDB
Domain cluster: rep: IMGVR_UViG_3300002966_000910-3300002966-JGI24721J44947_1000064939__D216-347
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c9oB03 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.72 40.0 5.15e-01 76.4% 95.2%
3uk6A02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.71 39.0 5.06e-01 76.4% 95.2%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3666007 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.72 39.0 4.92e-01 76.4% 87.8%
4970852 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.71 39.0 4.76e-01 74.3% 84.0%
3926437 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.69 38.0 4.64e-01 73.6% 83.2%
3519328 148.1.3.18 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › TIP49_C 0.68 37.0 4.50e-01 73.6% 82.1%
4409068 160.1.1.4 ↗ alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_VA_C 0.51 40.0 4.06e-01 82.4% 84.8%