←Back to structures
MN234216.1__QFG13307.1__SEA_GILGAMESH_115__00115
Bact-VirMN234216.1__QFG13307.1__SEA_GILGAMESH_115__00115
Identity
- Accession:
- MN234216 ↗
- Kingdom:
- phage
Quality
60.2
mean pLDDT
Taxonomy
TaxID: 2599890
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 13-107
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3a5zB01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 46.0 | 5.54e-01 | 84.2% | 93.7% |
| 3oyyA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 44.0 | 5.13e-01 | 84.2% | 89.4% |
| 1uebA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 43.0 | 5.13e-01 | 84.2% | 93.7% |
| 1vw4M01 | 2.30.30.790 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 50.0 | 4.44e-01 | 85.3% | 57.6% |
| 2qi2A01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.64 | 50.0 | 4.91e-01 | 89.5% | 76.0% |
| 4ld6A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 45.0 | 4.21e-01 | 85.3% | 60.7% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 41.0 | 4.01e-01 | 85.3% | 61.1% |
| 1of5B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 45.0 | 4.12e-01 | 84.2% | 87.5% |
| 2vgmA01 | 2.30.30.870 | Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A | 0.58 | 47.0 | 4.33e-01 | 88.4% | 75.4% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.57 | 40.0 | 3.42e-01 | 73.7% | 83.1% |
| 3tw6D02 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.55 | 33.0 | 3.69e-01 | 91.6% | 76.3% |
| 1ixdA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.53 | 42.0 | 4.12e-01 | 85.3% | 77.9% |
| 1whjA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.53 | 40.0 | 3.95e-01 | 84.2% | 75.5% |
| 2bi0A02 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 38.0 | 3.36e-01 | 77.9% | 89.1% |
| 4khbC00 | 2.30.29.210 | Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p | 0.52 | 37.0 | 3.60e-01 | 75.8% | 67.0% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 41.0 | 3.66e-01 | 87.4% | 96.5% |
| 1jb7A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.52 | 37.0 | 3.13e-01 | 76.8% | 78.7% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 40.0 | 3.52e-01 | 89.5% | 74.7% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3791752 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 44.0 | 5.16e-01 | 83.2% | 90.8% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.69 | 43.0 | 4.94e-01 | 84.2% | 85.7% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.68 | 45.0 | 4.96e-01 | 83.2% | 85.3% |
| None | — | 0.68 | 38.0 | 2.64e-01 | 74.7% | 17.4% | |
| 3447797 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.65 | 52.0 | 4.43e-01 | 85.3% | 90.0% |
| None | — | 0.63 | 37.0 | 2.56e-01 | 74.7% | 17.8% | |
| 5054152 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.63 | 52.0 | 4.77e-01 | 89.5% | 78.4% |
| 3341337 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.62 | 49.0 | 4.09e-01 | 85.3% | 92.9% |
| 5036729 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.62 | 52.0 | 4.80e-01 | 89.5% | 79.2% |
| 3523144 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.62 | 49.0 | 3.89e-01 | 85.3% | 60.0% |
| 3584109 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 49.0 | 4.25e-01 | 85.3% | 81.2% |
| 4942589 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.61 | 40.0 | 4.51e-01 | 84.2% | 91.4% |
| 3617741 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 48.0 | 3.75e-01 | 85.3% | 56.1% |
| 3926950 | 4.1.1.214 ↗ | beta barrels › SH3 › SH3 › SH3 › GCN5L1 | 0.60 | 45.0 | 4.13e-01 | 80.0% | 61.7% |
| 4931113 | 4.23.1.2 ↗ | beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 | 0.60 | 49.0 | 4.73e-01 | 91.6% | 76.4% |
| 4461872 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 39.0 | 3.97e-01 | 80.0% | 66.3% |
| 3623141 | 4.1.1.217 ↗ | beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 | 0.59 | 47.0 | 4.65e-01 | 84.2% | 90.0% |
| 3918912 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 46.0 | 3.79e-01 | 83.2% | 63.3% |
| 3495220 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.59 | 46.0 | 3.90e-01 | 85.3% | 70.0% |
| 3928323 | 4.27.1.1 ↗ | beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 › MRP-S34 | 0.58 | 44.0 | 3.50e-01 | 86.3% | 39.5% |
| 3990732 | 4.1.1.309 ↗ | beta barrels › SH3 › SH3 › SH3 › MRP-S34 | 0.58 | 43.0 | 4.36e-01 | 86.3% | 77.9% |
| 3517627 | 4.27.1.1 ↗ | beta barrels › SH3 › Mitoribosomal protein mS34 › Mitoribosomal protein mS34 › MRP-S34 | 0.58 | 44.0 | 3.56e-01 | 86.3% | 41.7% |
| 3297150 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 41.0 | 4.09e-01 | 81.1% | 70.0% |
| 3278698 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 46.0 | 4.45e-01 | 85.3% | 92.4% |
| 3853638 | 4.8.1.9 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_2 | 0.57 | 35.0 | 3.81e-01 | 77.9% | 73.8% |
| 3888395 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.56 | 44.0 | 4.66e-01 | 85.3% | 94.0% |
| 3646145 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.55 | 46.0 | 2.99e-01 | 88.4% | 24.4% |
| 3213653 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.55 | 41.0 | 4.42e-01 | 78.9% | 95.0% |
| 4107641 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 44.0 | 3.54e-01 | 87.4% | 60.5% |
| 3883964 | 2.3.1.2 ↗ | beta barrels › OB-fold › TIMP-like › TIMP-like › NTR | 0.55 | 38.0 | 3.26e-01 | 71.6% | 53.3% |
| 3223396 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 41.0 | 3.85e-01 | 82.1% | 65.2% |
| 4019099 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.54 | 44.0 | 3.96e-01 | 89.5% | 74.8% |
| 4033933 | 9.9.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB › DUF1934 | 0.54 | 38.0 | 3.62e-01 | 74.7% | 65.2% |
| 4419813 | 9.4.1.4 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › PF26335 | 0.53 | 37.0 | 3.21e-01 | 72.6% | 86.6% |
| 5070350 | 222.1.1.1 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas | 0.53 | 45.0 | 3.85e-01 | 92.6% | 96.7% |
| 5012504 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.52 | 36.0 | 2.96e-01 | 73.7% | 37.2% |
| 3484705 | 220.1.1.61 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C_FAK1 | 0.52 | 36.0 | 3.23e-01 | 72.6% | 60.7% |
| 3062986 | 222.1.1.14 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MC_hydratase | 0.51 | 43.0 | 3.55e-01 | 95.8% | 82.4% |
| 3473111 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 37.0 | 2.37e-01 | 76.8% | 16.7% |
D2
medium
residues 114-186