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MN234216.1__QFG13309.1__SEA_GILGAMESH_117__00117

Bact-Vir

MN234216.1__QFG13309.1__SEA_GILGAMESH_117__00117

Identity

Accession:
MN234216 ↗
Kingdom:
phage

Quality

64.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 86-149
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.72 60.0 5.15e-01 89.1% 67.0%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.72 54.0 5.77e-01 90.6% 94.4%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.72 60.0 5.18e-01 89.1% 67.4%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.83e-01 90.6% 98.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 5.73e-01 89.1% 90.3%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 57.0 5.19e-01 90.6% 77.4%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.35e-01 82.8% 86.7%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 47.0 4.11e-01 92.2% 49.5%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.40e-01 89.1% 86.1%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.66 53.0 4.35e-01 85.9% 79.3%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.65 44.0 3.97e-01 92.2% 51.1%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.64 43.0 4.53e-01 100.0% 77.2%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 48.0 3.68e-01 84.4% 81.5%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.67e-01 90.6% 73.5%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 52.0 4.92e-01 92.2% 77.6%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.79e-01 89.1% 85.3%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 49.0 3.89e-01 90.6% 81.3%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 48.0 3.83e-01 89.1% 43.5%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 50.0 3.14e-01 96.9% 25.7%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 47.0 3.82e-01 89.1% 46.4%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.58 41.0 2.86e-01 75.0% 87.6%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.58 41.0 3.93e-01 76.6% 87.0%
1luiA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 46.0 3.92e-01 89.1% 88.9%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.58 46.0 3.98e-01 90.6% 76.4%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 47.0 4.23e-01 92.2% 67.4%
3p51A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 48.0 3.74e-01 93.8% 77.2%
3m1uA01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.58 49.0 3.67e-01 96.9% 91.2%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 48.0 4.08e-01 95.3% 90.9%
2rsxA00 3.10.450.420 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 47.0 3.57e-01 96.9% 97.5%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 46.0 3.87e-01 98.4% 86.2%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.55 40.0 3.51e-01 79.7% 100.0%
6p2kB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.88e-01 96.9% 22.3%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 46.0 3.01e-01 96.9% 24.0%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 42.0 3.26e-01 90.6% 88.2%
4ljzC06 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 37.0 3.62e-01 76.6% 90.7%
1gydB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.89e-01 100.0% 93.0%
1uv4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 43.0 2.90e-01 96.9% 30.9%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.52 43.0 3.40e-01 92.2% 89.9%
3wodG00 2.30.30.1250 Mainly Beta › Roll › SH3 type barrels. › 0.52 46.0 3.71e-01 100.0% 67.7%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 36.0 2.68e-01 76.6% 28.1%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.51 35.0 3.73e-01 84.4% 82.1%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 41.0 3.47e-01 92.2% 82.5%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.67e-01 75.0% 94.8%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.80 60.0 6.37e-01 90.6% 92.7%
3596994 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 59.0 6.61e-01 81.2% 100.0%
5013892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 58.0 6.23e-01 90.6% 92.7%
3964846 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.76 55.0 5.01e-01 89.1% 57.6%
3313139 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.76 63.0 4.51e-01 89.1% 45.1%
4116921 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.76 53.0 5.49e-01 87.5% 78.3%
3989139 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.75 53.0 5.28e-01 89.1% 72.3%
3839849 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.74 53.0 5.29e-01 89.1% 73.8%
3278801 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.74 52.0 5.17e-01 89.1% 72.3%
3549761 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 56.0 4.81e-01 89.1% 53.7%
4168653 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.74 55.0 6.11e-01 82.8% 100.0%
3451171 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.84e-01 90.6% 83.1%
4611708 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.73 51.0 5.28e-01 89.1% 78.3%
4662947 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.73 51.0 5.13e-01 89.1% 72.3%
3789647 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 62.0 4.57e-01 90.6% 42.6%
4347999 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.73 51.0 5.10e-01 89.1% 72.3%
4331473 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.73 52.0 4.87e-01 89.1% 61.3%
3598283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 59.0 4.61e-01 87.5% 66.2%
3590784 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.72 51.0 5.15e-01 90.6% 73.8%
3645395 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.72 62.0 5.69e-01 92.2% 93.8%
4995678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 53.0 5.65e-01 84.4% 90.9%
4071917 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.72 52.0 5.77e-01 84.4% 100.0%
3703932 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 58.0 6.00e-01 87.5% 96.7%
4073433 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.71 59.0 5.50e-01 92.2% 86.3%
4251101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 58.0 5.25e-01 89.1% 81.2%
3318785 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.70 56.0 3.44e-01 85.9% 86.5%
4078120 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.70 55.0 5.89e-01 85.9% 96.4%
3749631 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.70 46.0 3.86e-01 71.9% 41.0%
3733191 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 61.0 3.70e-01 95.3% 50.0%
4002985 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.89e-01 89.1% 93.3%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.69 57.0 5.39e-01 87.5% 84.0%
4526316 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.69 48.0 4.14e-01 92.2% 48.4%
3331837 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.69 49.0 3.29e-01 75.0% 36.5%
3946297 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.68 53.0 5.20e-01 85.9% 77.1%
4967397 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 57.0 5.73e-01 93.8% 89.2%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 56.0 5.48e-01 89.1% 81.4%
4975150 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.31e-01 89.1% 86.7%
3948255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 4.45e-01 90.6% 62.3%
3664869 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.68 56.0 3.79e-01 89.1% 37.7%
4340758 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.48e-01 92.2% 98.6%
4128405 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.68 47.0 4.57e-01 92.2% 65.7%
3708283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.30e-01 96.9% 96.5%
4976896 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 55.0 4.84e-01 90.6% 68.4%
4021079 4.1.1.103 beta barrels › SH3 › SH3 › SH3 › SH3_12 0.67 58.0 4.07e-01 95.3% 97.4%
3397845 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 56.0 4.66e-01 90.6% 61.9%
3743614 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.66 50.0 5.14e-01 81.2% 85.0%
3309356 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.65 59.0 3.62e-01 100.0% 96.6%
4193599 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 54.0 4.56e-01 90.6% 66.7%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 5.02e-01 89.1% 89.3%
3918299 4.1.1.376 beta barrels › SH3 › SH3 › SH3 › Chromo_MORC2_6th 0.63 56.0 5.42e-01 96.9% 88.6%
3997515 2003.1.5.13 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.62 40.0 2.65e-01 70.3% 16.5%
4398865 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.61 47.0 4.12e-01 82.8% 84.2%
3934655 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.19e-01 82.8% 97.6%
1063578 9.2.1.1 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.58 46.0 3.98e-01 89.1% 77.4%
3602785 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.69e-01 92.2% 93.3%
3707023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 43.0 3.74e-01 79.7% 79.0%
3385474 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.57 45.0 3.41e-01 90.6% 43.9%
3500684 4.1.1.71 beta barrels › SH3 › SH3 › SH3 › Gemin7 0.56 45.0 4.28e-01 92.2% 78.8%
5018124 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.55 44.0 4.16e-01 93.8% 94.1%
3843359 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.55 43.0 3.98e-01 89.1% 80.0%
3504860 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.55 47.0 4.59e-01 92.2% 94.3%
3437699 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.54 44.0 3.10e-01 96.9% 46.3%
3451106 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 41.0 3.38e-01 90.6% 83.0%
3167877 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.52 44.0 2.63e-01 100.0% 21.3%
3263883 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.52 45.0 2.74e-01 100.0% 21.3%
3266673 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.87e-01 100.0% 74.1%
1822301 5.1.4.32 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.52 44.0 2.67e-01 100.0% 17.8%
4636538 3264.1.1.0 0.52 39.0 2.95e-01 87.5% 32.5%
3239417 234.3.1.0 a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.51 38.0 3.08e-01 82.8% 48.9%
3445272 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.50 40.0 2.54e-01 89.1% 26.5%